Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001615A_C05 KMC001615A_c05
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [... 77 2e-13
ref|NP_176681.1| hypothetical protein; protein id: At1g65010.1 [... 75 6e-13
pir||F96673 hypothetical protein F13O11.30 [imported] - Arabidop... 75 6e-13
ref|NP_186943.1| unknown protein; protein id: At3g02930.1 [Arabi... 66 3e-10
ref|NP_197175.1| putative protein; protein id: At5g16730.1 [Arab... 65 6e-10
>ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [Arabidopsis
thaliana]
Length = 1212
Score = 77.0 bits (188), Expect = 2e-13
Identities = 45/92 (48%), Positives = 59/92 (63%), Gaps = 1/92 (1%)
Frame = -2
Query: 429 EEFRIANPDKSCSKRSIKDK-RTIEKLKEAQRVTKEANEKLMEALVAQKRVEEDS*IEKL 253
E+ R AN +R KDK + ++ LKE++++TKEANEKL EAL AQ E+ S IEK
Sbjct: 95 EDLRKANEQ---IERLKKDKAKALDDLKESEKLTKEANEKLREALAAQHHAEKSSEIEKF 151
Query: 252 RSFESGHAGIEAIQKMEEDGKKSFEGVRNQHA 157
R+ E AGIEA+ K E KK E +R+QHA
Sbjct: 152 RAVELEQAGIEAVHKKEVSWKKEVESIRSQHA 183
>ref|NP_176681.1| hypothetical protein; protein id: At1g65010.1 [Arabidopsis
thaliana]
Length = 1318
Score = 75.1 bits (183), Expect = 6e-13
Identities = 38/75 (50%), Positives = 52/75 (68%), Gaps = 1/75 (1%)
Frame = -2
Query: 378 KDK-RTIEKLKEAQRVTKEANEKLMEALVAQKRVEEDS*IEKLRSFESGHAGIEAIQKME 202
KDK + I+ LKE++++ +EANEKL EAL AQKR EE +EK R+ E AG+EA+QK +
Sbjct: 79 KDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKD 138
Query: 201 EDGKKSFEGVRNQHA 157
K E +R+QHA
Sbjct: 139 VTSKNELESIRSQHA 153
Score = 31.6 bits (70), Expect = 7.8
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -2
Query: 363 IEKLKEAQRVTKEANEKLMEALVAQKRVEE-----DS*IEKLRSFESGHAGIEAIQKMEE 199
+EK E QRVT+E E + +A K++EE +S +EK + A A++KMEE
Sbjct: 1086 LEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAA--ALEKMEE 1143
Query: 198 DGK 190
K
Sbjct: 1144 PSK 1146
>pir||F96673 hypothetical protein F13O11.30 [imported] - Arabidopsis thaliana
gi|5042434|gb|AAD38273.1|AC006193_29 Hypothetical
protein [Arabidopsis thaliana]
Length = 1313
Score = 75.1 bits (183), Expect = 6e-13
Identities = 38/75 (50%), Positives = 52/75 (68%), Gaps = 1/75 (1%)
Frame = -2
Query: 378 KDK-RTIEKLKEAQRVTKEANEKLMEALVAQKRVEEDS*IEKLRSFESGHAGIEAIQKME 202
KDK + I+ LKE++++ +EANEKL EAL AQKR EE +EK R+ E AG+EA+QK +
Sbjct: 74 KDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKD 133
Query: 201 EDGKKSFEGVRNQHA 157
K E +R+QHA
Sbjct: 134 VTSKNELESIRSQHA 148
Score = 31.6 bits (70), Expect = 7.8
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -2
Query: 363 IEKLKEAQRVTKEANEKLMEALVAQKRVEE-----DS*IEKLRSFESGHAGIEAIQKMEE 199
+EK E QRVT+E E + +A K++EE +S +EK + A A++KMEE
Sbjct: 1081 LEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAA--ALEKMEE 1138
Query: 198 DGK 190
K
Sbjct: 1139 PSK 1141
>ref|NP_186943.1| unknown protein; protein id: At3g02930.1 [Arabidopsis thaliana]
gi|6728968|gb|AAF26966.1|AC018363_11 unknown protein
[Arabidopsis thaliana]
Length = 806
Score = 66.2 bits (160), Expect = 3e-10
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = -2
Query: 369 RTIEKLKEAQRVTKEANEKLMEALVAQKRVEEDS*IEKLRSFESGHAGIEAIQKMEEDGK 190
+ +++LKEA++ +EA+EKL EAL AQK+ E+ IEK FE AGIEA+Q+ EE+ K
Sbjct: 112 KALDQLKEARKEAEEASEKLDEALEAQKKSLENFEIEK---FEVVEAGIEAVQRKEEELK 168
Query: 189 KSFEGVRNQHA 157
K E V+NQHA
Sbjct: 169 KELENVKNQHA 179
>ref|NP_197175.1| putative protein; protein id: At5g16730.1 [Arabidopsis thaliana]
gi|11357813|pir||T51505 hypothetical protein F5E19_70 -
Arabidopsis thaliana gi|9755725|emb|CAC01837.1| putative
protein [Arabidopsis thaliana]
Length = 853
Score = 65.1 bits (157), Expect = 6e-10
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -2
Query: 465 SQQSTSGNPTSYEEFRIANPDKSCSKRSIKDK-RTIEKLKEAQRVTKEANEKLMEALVAQ 289
S Q+T+ E+ + AN S + KDK + +++LK+A++ ++ KL +AL AQ
Sbjct: 93 SPQTTTRLSQIKEDLKKANERISSLE---KDKAKALDELKQAKKEAEQVTLKLDDALKAQ 149
Query: 288 KRVEEDS*IEKLRSFESGHAGIEAIQKMEEDGKKSFEGVRNQHA 157
K VEE+S IEK ++ E AGIEA+Q EE+ KK E V+NQHA
Sbjct: 150 KHVEENSEIEKFQAVE---AGIEAVQNNEEELKKELETVKNQHA 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,487,227
Number of Sequences: 1393205
Number of extensions: 8770076
Number of successful extensions: 29805
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 28496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29718
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
