Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001614A_C02 KMC001614A_c02
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173786.1| putative auxin-induced protein; protein id: At1... 46 3e-05
sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g237... 46 3e-05
gb|AAM62737.1| Quinone oxidoreductase-like protein [Arabidopsis ... 46 3e-05
gb|AAL06644.1| putative quinone oxidoreductase [Fragaria x anana... 49 4e-05
emb|CAA04767.1| ripening-induced protein [Fragaria vesca] 49 4e-05
>ref|NP_173786.1| putative auxin-induced protein; protein id: At1g23740.1, supported
by cDNA: 155143., supported by cDNA: gi_15724192,
supported by cDNA: gi_20334863 [Arabidopsis thaliana]
gi|15724193|gb|AAL06488.1|AF411799_1 At1g23740/F5O8_27
[Arabidopsis thaliana] gi|20334864|gb|AAM16188.1|
At1g23740/F5O8_27 [Arabidopsis thaliana]
Length = 386
Score = 45.8 bits (107), Expect(2) = 3e-05
Identities = 18/23 (78%), Positives = 23/23 (99%)
Frame = -2
Query: 632 IDYTKENVENLPEKFDVVFDAVG 564
IDYTKEN+E+LP+K+DVVFDA+G
Sbjct: 277 IDYTKENIEDLPDKYDVVFDAIG 299
Score = 23.5 bits (49), Expect(2) = 3e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 568 LGTADTTFKPLKEGGKFVTI*YHXGLPPPAISYYMIEILMGXLS*KETXNRIXESGXXVK 389
+G D K +KEGGK V + + PP + ++ + N ESG VK
Sbjct: 298 IGMCDKAVKVIKEGGKVVAL--TGAVTPPGFRF----VVTSNGDVLKKLNPYIESG-KVK 350
Query: 388 PIXLDP 371
P+ +DP
Sbjct: 351 PV-VDP 355
>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740
gi|25282938|pir||E86371 quinone oxidoreductase-like
protein At1g23740 - Arabidopsis thaliana
gi|4056456|gb|AAC98029.1| Strong similarity to gb|U20808
auxin-induced protein from Vigna radiata and a member of
the zinc-binding dehydrogenase family PF|00107. ESTs
gb|T43674, gb|H77006 and gb|AA395179 come from this
gene. [Arabidopsis thaliana]
Length = 309
Score = 45.8 bits (107), Expect(2) = 3e-05
Identities = 18/23 (78%), Positives = 23/23 (99%)
Frame = -2
Query: 632 IDYTKENVENLPEKFDVVFDAVG 564
IDYTKEN+E+LP+K+DVVFDA+G
Sbjct: 200 IDYTKENIEDLPDKYDVVFDAIG 222
Score = 23.5 bits (49), Expect(2) = 3e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 568 LGTADTTFKPLKEGGKFVTI*YHXGLPPPAISYYMIEILMGXLS*KETXNRIXESGXXVK 389
+G D K +KEGGK V + + PP + ++ + N ESG VK
Sbjct: 221 IGMCDKAVKVIKEGGKVVAL--TGAVTPPGFRF----VVTSNGDVLKKLNPYIESG-KVK 273
Query: 388 PIXLDP 371
P+ +DP
Sbjct: 274 PV-VDP 278
>gb|AAM62737.1| Quinone oxidoreductase-like protein [Arabidopsis thaliana]
Length = 309
Score = 45.8 bits (107), Expect(2) = 3e-05
Identities = 18/23 (78%), Positives = 23/23 (99%)
Frame = -2
Query: 632 IDYTKENVENLPEKFDVVFDAVG 564
IDYTKEN+E+LP+K+DVVFDA+G
Sbjct: 200 IDYTKENIEDLPDKYDVVFDAIG 222
Score = 23.5 bits (49), Expect(2) = 3e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 568 LGTADTTFKPLKEGGKFVTI*YHXGLPPPAISYYMIEILMGXLS*KETXNRIXESGXXVK 389
+G D K +KEGGK V + + PP + ++ + N ESG VK
Sbjct: 221 IGMCDKAVKVIKEGGKVVAL--TGAVTPPGFRF----VVTSNGDVLKKLNPYIESG-KVK 273
Query: 388 PIXLDP 371
P+ +DP
Sbjct: 274 PV-VDP 278
>gb|AAL06644.1| putative quinone oxidoreductase [Fragaria x ananassa]
Length = 339
Score = 49.3 bits (116), Expect = 4e-05
Identities = 32/73 (43%), Positives = 45/73 (60%)
Frame = -2
Query: 632 IDYTKENVENLPEKFDVVFDAVGDR*HDIQAFERRRQICDNLVPPWTSTTGNFLLHD*NS 453
IDYTKEN E+LPEKFDVV+DAVG+ ++A + ++ +V P T F+L +
Sbjct: 230 IDYTKENFEDLPEKFDVVYDAVGETDKAVKAVKEGGKVV-TIVGPATPPAILFVL----T 284
Query: 452 DGXAVLERNXKPY 414
+VLE+ KPY
Sbjct: 285 SKGSVLEK-LKPY 296
>emb|CAA04767.1| ripening-induced protein [Fragaria vesca]
Length = 337
Score = 49.3 bits (116), Expect = 4e-05
Identities = 32/73 (43%), Positives = 45/73 (60%)
Frame = -2
Query: 632 IDYTKENVENLPEKFDVVFDAVGDR*HDIQAFERRRQICDNLVPPWTSTTGNFLLHD*NS 453
IDYTKEN E+LPEKFDVV+DAVG+ ++A + ++ +V P T F+L +
Sbjct: 228 IDYTKENFEDLPEKFDVVYDAVGETDKAVKAVKEGGKVV-TIVGPATPPAILFVL----T 282
Query: 452 DGXAVLERNXKPY 414
+VLE+ KPY
Sbjct: 283 SKGSVLEK-LKPY 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,912,580
Number of Sequences: 1393205
Number of extensions: 9389961
Number of successful extensions: 18016
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18010
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
