Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001613A_C01 KMC001613A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK62819.1| ubiquitin conjugating enzyme 2 [Lycopersicon escu... 88 1e-16
ref|NP_173172.1| putative ubiquitin-conjugating enzyme; protein ... 74 2e-12
ref|NP_199854.1| ubiquitin conjugating enzyme-like protein; prot... 69 6e-11
gb|AAC32141.1| probable ubiquitin-conjugating enzyme E2 [Picea m... 64 2e-09
gb|AAL35400.1| ubiquitin conjugating enzyme 2 [Zea mays] 63 3e-09
>gb|AAK62819.1| ubiquitin conjugating enzyme 2 [Lycopersicon esculentum]
Length = 239
Score = 87.8 bits (216), Expect = 1e-16
Identities = 48/86 (55%), Positives = 59/86 (67%), Gaps = 1/86 (1%)
Frame = -3
Query: 663 PEYVEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDVKMVDG-KDVRKNRK 487
PEYVEKY QQ LS Q EQVSS + SRP+LE +S ++V V KDV+ ++
Sbjct: 154 PEYVEKYEQQQLSSQPVPEQVSSMPAGADKSRPLLEEHDNSPKDEVNRVKPLKDVKNQQR 213
Query: 486 RPFPTWMMLLLFSIFGVVMALPLLQL 409
+ PTW++LLL SIFGVVMALPLLQL
Sbjct: 214 KSVPTWLLLLLVSIFGVVMALPLLQL 239
>ref|NP_173172.1| putative ubiquitin-conjugating enzyme; protein id: At1g17280.1,
supported by cDNA: 114822. [Arabidopsis thaliana]
gi|25402819|pir||C86309 Similar to Ubiquitin Conjugating
Enzyme [imported] - Arabidopsis thaliana
gi|5734741|gb|AAD50006.1|AC007651_1 Similar to Ubiquitin
Conjugating Enzyme [Arabidopsis thaliana]
gi|21536906|gb|AAM61238.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|27765034|gb|AAO23638.1| At1g17280 [Arabidopsis
thaliana]
Length = 237
Score = 73.9 bits (180), Expect = 2e-12
Identities = 39/85 (45%), Positives = 55/85 (63%)
Frame = -3
Query: 663 PEYVEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDVKMVDGKDVRKNRKR 484
PEYVEKYNQQ L+EQ ++ + E ++ E+++D D + K+ +KN K+
Sbjct: 154 PEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEG-GLKERKKNNKQ 212
Query: 483 PFPTWMMLLLFSIFGVVMALPLLQL 409
P W++LLL S+FGVVMALPLLQL
Sbjct: 213 GLPAWIILLLVSVFGVVMALPLLQL 237
>ref|NP_199854.1| ubiquitin conjugating enzyme-like protein; protein id: At5g50430.1,
supported by cDNA: gi_14190508 [Arabidopsis thaliana]
gi|9758925|dbj|BAB09462.1| ubiquitin conjugating
enzyme-like protein [Arabidopsis thaliana]
gi|14190509|gb|AAK55735.1|AF380654_1 AT5g50430/MXI22_15
[Arabidopsis thaliana] gi|22655424|gb|AAM98304.1|
At5g50430/MXI22_15 [Arabidopsis thaliana]
Length = 243
Score = 68.9 bits (167), Expect = 6e-11
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = -3
Query: 663 PEYVEKYNQQLLSEQVASEQVSS-----EMSHVKSSRPVLERSLDSAGEDVKMVDGKDVR 499
PEYVEKY+QQ ++E+ A+ Q ++ + +++ E+S+ E ++ V K+ R
Sbjct: 154 PEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERR 213
Query: 498 KNRKRPFPTWMMLLLFSIFGVVMALPLLQL 409
+N+K P W++LLL SI GVVMALPLLQL
Sbjct: 214 RNKKEALPGWIVLLLVSIVGVVMALPLLQL 243
>gb|AAC32141.1| probable ubiquitin-conjugating enzyme E2 [Picea mariana]
Length = 242
Score = 63.9 bits (154), Expect = 2e-09
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = -3
Query: 663 PEYVEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDVKMVDGKDVRKNRKR 484
PEY EKY++Q +E + SE ++S K S V + + + K K ++ R +
Sbjct: 154 PEYAEKYSEQQKAENMNSE-LTSNKGDAKPSTTVAQEQSQAIRHNDKETGHKGPKRGRSK 212
Query: 483 PFPTWMMLLLFSIFGVVMALPLLQL 409
FPTW+++LL ++FG VMALPLL L
Sbjct: 213 NFPTWLLVLLMAVFGSVMALPLLNL 237
>gb|AAL35400.1| ubiquitin conjugating enzyme 2 [Zea mays]
Length = 239
Score = 63.2 bits (152), Expect = 3e-09
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = -3
Query: 663 PEYVEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDVKMVDGKDVRKNRKR 484
PEYVEKYNQQ E A+E V E S V + + + +D KN+K+
Sbjct: 157 PEYVEKYNQQQQLENTAAEPVPQENPAPVPSLAVQQAPVVANRAQPLAEVRRD--KNQKK 214
Query: 483 PFPTWMMLLLFSIFGVVMALPLLQL 409
P WM+L++FS+FG VMALPL+QL
Sbjct: 215 AVPFWMVLVMFSVFGAVMALPLMQL 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,405,119
Number of Sequences: 1393205
Number of extensions: 12643588
Number of successful extensions: 35786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 34068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35721
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
