Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001606A_C02 KMC001606A_c02
(705 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial precursor 165 5e-42
ref|NP_188120.1| mitochondrial NAD-dependent malate dehydrogenas... 164 1e-41
gb|AAF69549.1|AC008007_24 F12M16.14 [Arabidopsis thaliana] 165 1e-41
gb|AAM64855.1| mitochondrial NAD-dependent malate dehydrogenase ... 165 1e-41
ref|NP_564625.1| mitochondrial NAD-dependent malate dehydrogenas... 165 1e-41
>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial precursor
Length = 339
Score = 165 bits (418), Expect(2) = 5e-42
Identities = 82/93 (88%), Positives = 88/93 (94%)
Frame = -1
Query: 702 IQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSSV 523
I+ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPDVVECSYVQSS+
Sbjct: 225 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSI 284
Query: 522 TDLPFFASKVRLGKNGWDEVLGLGTLSDFENQG 424
T+LPFFASKVRLGKNG +EVL LG LSDFE +G
Sbjct: 285 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 317
Score = 28.1 bits (61), Expect(2) = 5e-42
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 433 ESRPLKTSRVNSQSSIEKGIKFAN 362
E LK + +SSIEKGIKFAN
Sbjct: 314 EKEGLKQLKPELKSSIEKGIKFAN 337
>ref|NP_188120.1| mitochondrial NAD-dependent malate dehydrogenase, putative; protein
id: At3g15020.1, supported by cDNA: 34499., supported by
cDNA: gi_15010581, supported by cDNA: gi_20147388
[Arabidopsis thaliana] gi|8777485|dbj|BAA97065.1|
NAD-dependent malate dehydrogenase [Arabidopsis
thaliana] gi|15010582|gb|AAK73950.1| AT3g15020/K15M2_16
[Arabidopsis thaliana] gi|20147389|gb|AAM10404.1|
AT3g15020/K15M2_16 [Arabidopsis thaliana]
Length = 341
Score = 164 bits (416), Expect(2) = 1e-41
Identities = 81/94 (86%), Positives = 90/94 (95%)
Frame = -1
Query: 705 LIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSS 526
LI+ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECS+VQS+
Sbjct: 227 LIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQST 286
Query: 525 VTDLPFFASKVRLGKNGWDEVLGLGTLSDFENQG 424
+T+LPFFASKVRLGKNG +EVL LG LSDFE +G
Sbjct: 287 ITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 320
Score = 27.7 bits (60), Expect(2) = 1e-41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 433 ESRPLKTSRVNSQSSIEKGIKFAN 362
E L+ + +SSIEKGIKFAN
Sbjct: 317 EKEGLEALKAELKSSIEKGIKFAN 340
>gb|AAF69549.1|AC008007_24 F12M16.14 [Arabidopsis thaliana]
Length = 352
Score = 165 bits (418), Expect(2) = 1e-41
Identities = 80/94 (85%), Positives = 89/94 (94%)
Frame = -1
Query: 705 LIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSS 526
++ ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECSYVQS+
Sbjct: 238 ILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQST 297
Query: 525 VTDLPFFASKVRLGKNGWDEVLGLGTLSDFENQG 424
+T+LPFFASKVRLGKNG +EVL LG LSDFE +G
Sbjct: 298 ITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 331
Score = 26.6 bits (57), Expect(2) = 1e-41
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 433 ESRPLKTSRVNSQSSIEKGIKFAN 362
E L+ + +SSIEKG+KFAN
Sbjct: 328 EKEGLEALKPELKSSIEKGVKFAN 351
>gb|AAM64855.1| mitochondrial NAD-dependent malate dehydrogenase [Arabidopsis
thaliana]
Length = 341
Score = 165 bits (418), Expect(2) = 1e-41
Identities = 80/94 (85%), Positives = 89/94 (94%)
Frame = -1
Query: 705 LIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSS 526
++ ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECSYVQS+
Sbjct: 227 ILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQST 286
Query: 525 VTDLPFFASKVRLGKNGWDEVLGLGTLSDFENQG 424
+T+LPFFASKVRLGKNG +EVL LG LSDFE +G
Sbjct: 287 ITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 320
Score = 26.6 bits (57), Expect(2) = 1e-41
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 433 ESRPLKTSRVNSQSSIEKGIKFAN 362
E L+ + +SSIEKG+KFAN
Sbjct: 317 EKEGLEALKPELKSSIEKGVKFAN 340
>ref|NP_564625.1| mitochondrial NAD-dependent malate dehydrogenase; protein id:
At1g53240.1, supported by cDNA: 33917., supported by
cDNA: gi_12642847, supported by cDNA: gi_13265429,
supported by cDNA: gi_17065007 [Arabidopsis thaliana]
gi|11133715|sp|Q9ZP06|MDHM_ARATH Malate dehydrogenase,
mitochondrial precursor (mNAD-MDH)
gi|11251111|pir||T51311 malate dehydrogenase (EC
1.1.1.37) precursor, NAD-dependent, mitochondrial
[validated] - Arabidopsis thaliana
gi|3929649|emb|CAA10320.1| mitochondrial NAD-dependent
malate dehydrogenase [Arabidopsis thaliana]
gi|11692836|gb|AAG40021.1|AF324670_1 At1g53240
[Arabidopsis thaliana]
gi|12642848|gb|AAK00366.1|AF339684_1 putative
mitochondrial NAD-dependent malate dehydrogenase
[Arabidopsis thaliana] gi|17065008|gb|AAL32658.1|
similar to mitochondrial NAD-dependent malate
dehydrogenase [Arabidopsis thaliana]
gi|22136210|gb|AAM91183.1| similar to mitochondrial
NAD-dependent malate dehydrogenase [Arabidopsis
thaliana]
Length = 341
Score = 165 bits (418), Expect(2) = 1e-41
Identities = 80/94 (85%), Positives = 89/94 (94%)
Frame = -1
Query: 705 LIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSS 526
++ ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECSYVQS+
Sbjct: 227 ILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQST 286
Query: 525 VTDLPFFASKVRLGKNGWDEVLGLGTLSDFENQG 424
+T+LPFFASKVRLGKNG +EVL LG LSDFE +G
Sbjct: 287 ITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 320
Score = 26.6 bits (57), Expect(2) = 1e-41
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 433 ESRPLKTSRVNSQSSIEKGIKFAN 362
E L+ + +SSIEKG+KFAN
Sbjct: 317 EKEGLEALKPELKSSIEKGVKFAN 340
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,528,011
Number of Sequences: 1393205
Number of extensions: 12986096
Number of successful extensions: 41844
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 40722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41807
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
