Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001605A_C01 KMC001605A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180889.1| auxin regulated protein (IAA13); protein id: At... 106 3e-22
gb|AAO64809.1| At2g33310 [Arabidopsis thaliana] 106 3e-22
gb|AAM65588.1| putative auxin-induced protein, IAA12 [Arabidopsi... 104 1e-21
ref|NP_171949.1| putative auxin-induced protein, IAA12; protein ... 104 1e-21
emb|CAC84709.1| aux/IAA protein [Populus tremula x Populus tremu... 95 7e-19
>ref|NP_180889.1| auxin regulated protein (IAA13); protein id: At2g33310.1, supported
by cDNA: 13741., supported by cDNA: gi_12083207,
supported by cDNA: gi_972928 [Arabidopsis thaliana]
gi|18206243|sp|Q38831|AXID_ARATH Auxin-responsive
protein IAA13 (Indoleacetic acid-induced protein 13)
gi|1363484|pir||S58499 auxin regulated protein (IAA13)
[imported] - Arabidopsis thaliana
gi|972929|gb|AAC49054.1| IAA13 gi|2459414|gb|AAB80649.1|
auxin regulated protein (IAA13) [Arabidopsis thaliana]
gi|12083208|gb|AAG48763.1|AF332399_1 auxin-regulated
protein IAA13 [Arabidopsis thaliana]
gi|21537404|gb|AAM61745.1| auxin regulated protein IAA13
[Arabidopsis thaliana]
Length = 246
Score = 106 bits (264), Expect = 3e-22
Identities = 48/65 (73%), Positives = 57/65 (86%)
Frame = -3
Query: 612 KLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQ 433
+LLDGSS+FVLTYEDKEGDWMLVGDVPW MF SV+RLR+M+TSEANGLA R +E N RQ
Sbjct: 182 RLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQ 241
Query: 432 KSKPI 418
+ +P+
Sbjct: 242 RKQPV 246
>gb|AAO64809.1| At2g33310 [Arabidopsis thaliana]
Length = 247
Score = 106 bits (264), Expect = 3e-22
Identities = 48/65 (73%), Positives = 57/65 (86%)
Frame = -3
Query: 612 KLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQ 433
+LLDGSS+FVLTYEDKEGDWMLVGDVPW MF SV+RLR+M+TSEANGLA R +E N RQ
Sbjct: 183 RLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQ 242
Query: 432 KSKPI 418
+ +P+
Sbjct: 243 RKQPV 247
>gb|AAM65588.1| putative auxin-induced protein, IAA12 [Arabidopsis thaliana]
Length = 239
Score = 104 bits (259), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (85%)
Frame = -3
Query: 612 KLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQ 433
+LLDGSS FVLTYEDKEGDWMLVGDVPW MF SV+RLRIM TSEA+GLAPR +E+ RQ
Sbjct: 175 RLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234
Query: 432 KSKPI 418
++ P+
Sbjct: 235 RNNPV 239
>ref|NP_171949.1| putative auxin-induced protein, IAA12; protein id: At1g04550.1,
supported by cDNA: 40608., supported by cDNA:
gi_12083205, supported by cDNA: gi_17529011, supported
by cDNA: gi_20465450, supported by cDNA: gi_972926
[Arabidopsis thaliana] gi|11131318|sp|Q38830|AXIC_ARATH
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) gi|1363483|pir||S58498 IAA12
protein - Arabidopsis thaliana gi|972927|gb|AAC49053.1|
IAA12 gi|2494122|gb|AAB80631.1| Match to Arabidopsis
IAA12 (gb|U18414). [Arabidopsis thaliana]
gi|12083206|gb|AAG48762.1|AF332398_1 auxin-induced
protein, IAA12 [Arabidopsis thaliana]
gi|17529012|gb|AAL38716.1| auxin-induced protein IAA12
[Arabidopsis thaliana] gi|20465451|gb|AAM20185.1|
auxin-induced protein IAA12 [Arabidopsis thaliana]
Length = 239
Score = 104 bits (259), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (85%)
Frame = -3
Query: 612 KLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQ 433
+LLDGSS FVLTYEDKEGDWMLVGDVPW MF SV+RLRIM TSEA+GLAPR +E+ RQ
Sbjct: 175 RLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234
Query: 432 KSKPI 418
++ P+
Sbjct: 235 RNNPV 239
>emb|CAC84709.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 289
Score = 95.1 bits (235), Expect = 7e-19
Identities = 44/58 (75%), Positives = 50/58 (85%)
Frame = -3
Query: 639 IIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGL 466
I+ +RHS+LL GSS+FVLTYEDK+GDWMLVGDVPWGMF SV+RLRIMR SEA GL
Sbjct: 230 IMIDAKRHSQLLGGSSEFVLTYEDKDGDWMLVGDVPWGMFISSVKRLRIMRMSEATGL 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,032,105
Number of Sequences: 1393205
Number of extensions: 12373477
Number of successful extensions: 40234
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 37981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40021
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
