Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001602A_C01 KMC001602A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34922|G3PC_PEA Glyceraldehyde 3-phosphate dehydrogenase, cyt... 181 6e-89
sp|P34783|G3P_ATRNU Glyceraldehyde 3-phosphate dehydrogenase (GA... 179 7e-89
sp|P26518|G3PC_MAGLI Glyceraldehyde 3-phosphate dehydrogenase, c... 180 8e-88
emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicoti... 174 1e-87
sp|P34921|G3PC_DIACA Glyceraldehyde 3-phosphate dehydrogenase, c... 172 2e-87
>sp|P34922|G3PC_PEA Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
gi|7431538|pir||T06781 glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) - garden
pea gi|169091|gb|AAA33667.1| glyceraldehyde-3-phosphate
dehydrogenase gi|1345567|emb|CAA51675.1| glyceraldehyde
3-phosphate dehydrogenase (phosphorylating) [Pisum
sativum]
Length = 338
Score = 181 bits (458), Expect(2) = 6e-89
Identities = 86/97 (88%), Positives = 91/97 (93%)
Frame = +3
Query: 111 KIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHEVT 290
KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFITTDYMTYMFKYDSVHG WK+ E+T
Sbjct: 4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 63
Query: 291 VKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVE 401
VKD+NTLLFG KPVTVFA+RNPEEIPW TGADI+VE
Sbjct: 64 VKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVE 100
Score = 169 bits (428), Expect(2) = 6e-89
Identities = 84/92 (91%), Positives = 88/92 (95%)
Frame = +1
Query: 391 LLWRSTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMLVVGVNEHEYKPELNIISNASCT 570
++ STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM VVGVNE+EYKPE +IISNASCT
Sbjct: 97 IIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEFDIISNASCT 156
Query: 571 TNCLAPLAKVINDRFGIVEGLMTTVHSITATQ 666
TNCLAPLAKVINDRFGIVEGLMTTVHSITATQ
Sbjct: 157 TNCLAPLAKVINDRFGIVEGLMTTVHSITATQ 188
>sp|P34783|G3P_ATRNU Glyceraldehyde 3-phosphate dehydrogenase (GAPDH)
gi|1085816|pir||S38570 glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) -
Atriplex nummularia gi|409575|gb|AAA03442.1|
glyceraldehyde-3-phosphate dehydrogenase
gi|414607|emb|CAA53269.1| glyceraldehyde-3-phosphate
dehydrogenase [Atriplex nummularia]
Length = 360
Score = 179 bits (454), Expect(2) = 7e-89
Identities = 83/99 (83%), Positives = 88/99 (88%)
Frame = +3
Query: 105 MGKIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHE 284
M K+KIGINGFGRIGRLVARV L DD ELVA+NDPFITTDYMTYMFKYDSVHG WKHHE
Sbjct: 1 MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHE 60
Query: 285 VTVKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVE 401
+ VKD TLLFG++PVTVF NRNPEEIPWGQTGAD VVE
Sbjct: 61 LKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVE 99
Score = 170 bits (431), Expect(2) = 7e-89
Identities = 84/88 (95%), Positives = 86/88 (97%)
Frame = +1
Query: 403 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMLVVGVNEHEYKPELNIISNASCTTNCL 582
STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM VVGVNEHEYK ELNI+SNASCTTNCL
Sbjct: 100 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSELNIVSNASCTTNCL 159
Query: 583 APLAKVINDRFGIVEGLMTTVHSITATQ 666
APLAKVIND+FGIVEGLMTTVHSITATQ
Sbjct: 160 APLAKVINDKFGIVEGLMTTVHSITATQ 187
>sp|P26518|G3PC_MAGLI Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
gi|66014|pir||DEJMG glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) -
Magnolia liliiflora gi|19566|emb|CAA42905.1|
glyceraldehyde 3-phosphate dehydrogenase [Magnolia
liliiflora]
Length = 341
Score = 180 bits (457), Expect(2) = 8e-88
Identities = 85/97 (87%), Positives = 90/97 (92%)
Frame = +3
Query: 111 KIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHEVT 290
KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFITTDYMTYMFKYDSVHG WKHHE+
Sbjct: 5 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 64
Query: 291 VKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVE 401
VKD+ TLLFG+KPVTVF RNPEEIPWG+TGA+ VVE
Sbjct: 65 VKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVE 101
Score = 166 bits (419), Expect(2) = 8e-88
Identities = 81/88 (92%), Positives = 85/88 (96%)
Frame = +1
Query: 403 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMLVVGVNEHEYKPELNIISNASCTTNCL 582
STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM VVGVNEHEYK ++I+SNASCTTNCL
Sbjct: 102 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSNIDIVSNASCTTNCL 161
Query: 583 APLAKVINDRFGIVEGLMTTVHSITATQ 666
APLAKVIND+FGIVEGLMTTVHSITATQ
Sbjct: 162 APLAKVINDKFGIVEGLMTTVHSITATQ 189
>emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum]
Length = 337
Score = 174 bits (442), Expect(2) = 1e-87
Identities = 82/99 (82%), Positives = 88/99 (88%)
Frame = +3
Query: 105 MGKIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHE 284
M K+KIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+ +YMTYMFKYDSVHG WKHHE
Sbjct: 1 MAKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHE 60
Query: 285 VTVKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVE 401
+ VKD TLLFG+K VTVF RNPEEIPWGQTGAD +VE
Sbjct: 61 LKVKDDKTLLFGEKAVTVFGFRNPEEIPWGQTGADYIVE 99
Score = 171 bits (433), Expect(2) = 1e-87
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = +1
Query: 403 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMLVVGVNEHEYKPELNIISNASCTTNCL 582
STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM VVGVNE EYKPELNI+SNASCTTNCL
Sbjct: 100 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCL 159
Query: 583 APLAKVINDRFGIVEGLMTTVHSITATQ 666
APLAKVINDRFGIVEGLMTTVHSITATQ
Sbjct: 160 APLAKVINDRFGIVEGLMTTVHSITATQ 187
>sp|P34921|G3PC_DIACA Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
Length = 338
Score = 172 bits (437), Expect(2) = 2e-87
Identities = 85/88 (96%), Positives = 87/88 (98%)
Frame = +1
Query: 403 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMLVVGVNEHEYKPELNIISNASCTTNCL 582
STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM VVGVNEHEYKPEL+I+SNASCTTNCL
Sbjct: 100 STGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIVSNASCTTNCL 159
Query: 583 APLAKVINDRFGIVEGLMTTVHSITATQ 666
APLAKVINDRFGIVEGLMTTVHSITATQ
Sbjct: 160 APLAKVINDRFGIVEGLMTTVHSITATQ 187
Score = 172 bits (435), Expect(2) = 2e-87
Identities = 81/99 (81%), Positives = 86/99 (86%)
Frame = +3
Query: 105 MGKIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHE 284
M IKIGINGFGRIGRLVARV L R+D ELVAVNDPFITT+YMTYMFKYDSVHG WKHH+
Sbjct: 1 MAPIKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHD 60
Query: 285 VTVKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVE 401
+ VKD TLLFG+K VTVF NRNPEEIPWG TGAD VVE
Sbjct: 61 IKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVE 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,653,253
Number of Sequences: 1393205
Number of extensions: 14686953
Number of successful extensions: 49429
Number of sequences better than 10.0: 1769
Number of HSP's better than 10.0 without gapping: 43563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47110
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
