Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001597A_C01 KMC001597A_c01
(414 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193076.1| putative protein; protein id: At4g13400.1 [Arab... 40 8e-08
gb|AAC32122.1| hypothetical protein [Picea mariana] 37 2e-05
gb|AAM97033.1| putative protein [Arabidopsis thaliana] gi|231979... 45 2e-04
dbj|BAC40711.1| unnamed protein product [Mus musculus] 33 0.84
ref|XP_236916.1| similar to unc-5 homolog C; homolog of C. elega... 32 2.4
>ref|NP_193076.1| putative protein; protein id: At4g13400.1 [Arabidopsis thaliana]
gi|7487863|pir||T06297 hypothetical protein T9E8.140 -
Arabidopsis thaliana gi|4584545|emb|CAB40775.1| putative
protein [Arabidopsis thaliana]
gi|7268043|emb|CAB78382.1| putative protein [Arabidopsis
thaliana]
Length = 306
Score = 40.0 bits (92), Expect(2) = 8e-08
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -2
Query: 317 VHIHQELIPSNAALTFGEYSELLLDKYYHQK 225
+ IH+EL S+ LTFGEY+E LL+KYY K
Sbjct: 275 ITIHEELCLSDEVLTFGEYTEKLLNKYYDTK 305
Score = 36.2 bits (82), Expect(2) = 8e-08
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3
Query: 412 PKGEESSGIERSTFAFSMQPD 350
P+GEE+ G+ERSTFA MQPD
Sbjct: 246 PQGEEARGLERSTFALFMQPD 266
>gb|AAC32122.1| hypothetical protein [Picea mariana]
Length = 189
Score = 36.6 bits (83), Expect(2) = 2e-05
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 311 IHQELIPSNAALTFGEYSELLLDKYY 234
I +L SN ++TFG+YSEL+L+KYY
Sbjct: 160 IELQLTKSNGSMTFGDYSELVLNKYY 185
Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -3
Query: 412 PKGEESSGIERSTFAFSMQPD 350
P+G+++ G+ER+TFA MQP+
Sbjct: 122 PRGDKAHGVERNTFALFMQPN 142
>gb|AAM97033.1| putative protein [Arabidopsis thaliana] gi|23197950|gb|AAN15502.1|
putative protein [Arabidopsis thaliana]
Length = 203
Score = 45.1 bits (105), Expect = 2e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 329 FPEGVHIHQELIPSNAALTFGEYSELLLDKYYHQK 225
FP+ V IH+EL S+ LTFGEY+E LL+KYY K
Sbjct: 168 FPKEVTIHEELCLSDEVLTFGEYTEKLLNKYYDTK 202
Score = 39.7 bits (91), Expect = 0.009
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3
Query: 412 PKGEESSGIERSTFAFSMQPDLGWKAQYSPREFTFIKSL 296
P+GEE+ G+ERSTFA MQPD K + P+E T + L
Sbjct: 141 PQGEEARGLERSTFALFMQPDWDQKLTF-PKEVTIHEEL 178
>dbj|BAC40711.1| unnamed protein product [Mus musculus]
Length = 164
Score = 33.1 bits (74), Expect = 0.84
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = +3
Query: 132 LSLSNQLLTCWEEECWTLPPPINQQWLGCFLFLVVIFVKQQL*VLSKSKSGI*WNKLLMN 311
LS S + EEE W +PPP++Q L C +F + Q+ + S +G W +L +
Sbjct: 24 LSASGERFQASEEETWAVPPPVSQPPL-CNRLPPELFEQLQMLLEPNSVTGNDWRRLASH 82
Query: 312 VNSLG 326
+ G
Sbjct: 83 LGLCG 87
>ref|XP_236916.1| similar to unc-5 homolog C; homolog of C. elegans transmembrane
receptor Unc5; unc-5 homolog C (C. elegans) [Homo
sapiens] [Rattus norvegicus]
Length = 434
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 165 EEECWTLPPPINQQWLGCFLFLVVIFVKQQL*VLSKSKSGI*WNKLLMNVNSLG 326
EEE W +PPP++Q L C +F + Q+ + S +G W KL ++ G
Sbjct: 305 EEETWAVPPPVSQPPL-CNRLPPELFEQLQMLLEPSSVTGNDWRKLASHLGLCG 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,954,430
Number of Sequences: 1393205
Number of extensions: 7468233
Number of successful extensions: 17082
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17081
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
