Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001595A_C01 KMC001595A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566274.1| putative RING zinc finger protein; protein id: ... 143 2e-33
gb|AAF30307.1|AC018907_7 putative RING zinc finger protein [Arab... 143 2e-33
gb|AAL86506.1|AC099040_10 putative hydroxyproline-rich glycoprot... 142 3e-33
ref|NP_566356.1| expressed protein; protein id: At3g09770.1, sup... 133 2e-30
ref|NP_197409.1| unknown protein; protein id: At5g19080.1 [Arabi... 133 2e-30
>ref|NP_566274.1| putative RING zinc finger protein; protein id: At3g06140.1,
supported by cDNA: 40787. [Arabidopsis thaliana]
gi|21593638|gb|AAM65605.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 359
Score = 143 bits (360), Expect = 2e-33
Identities = 67/91 (73%), Positives = 76/91 (82%), Gaps = 1/91 (1%)
Frame = -3
Query: 605 LWIDDVRYELRELYGIGSSTAAD-FDDNDPQKECVICMTEPKDTAVLPCRHMCMCSDCAK 429
LWI+ VRYELRELYG + AA D++ ECVICMTE KDTAVLPCRH+CMCSDCAK
Sbjct: 269 LWIEGVRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAK 328
Query: 428 ELRLQSNKCPICRQPIEELIEIKINNGDQ*H 336
ELRLQSNKCPICRQPIEEL+EIK+N+ D+ H
Sbjct: 329 ELRLQSNKCPICRQPIEELLEIKMNSSDEQH 359
>gb|AAF30307.1|AC018907_7 putative RING zinc finger protein [Arabidopsis thaliana]
Length = 546
Score = 143 bits (360), Expect = 2e-33
Identities = 67/91 (73%), Positives = 76/91 (82%), Gaps = 1/91 (1%)
Frame = -3
Query: 605 LWIDDVRYELRELYGIGSSTAAD-FDDNDPQKECVICMTEPKDTAVLPCRHMCMCSDCAK 429
LWI+ VRYELRELYG + AA D++ ECVICMTE KDTAVLPCRH+CMCSDCAK
Sbjct: 456 LWIEGVRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAK 515
Query: 428 ELRLQSNKCPICRQPIEELIEIKINNGDQ*H 336
ELRLQSNKCPICRQPIEEL+EIK+N+ D+ H
Sbjct: 516 ELRLQSNKCPICRQPIEELLEIKMNSSDEQH 546
>gb|AAL86506.1|AC099040_10 putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica
cultivar-group)] gi|20279471|gb|AAM18751.1|AC099325_7
unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 142 bits (358), Expect = 3e-33
Identities = 58/85 (68%), Positives = 73/85 (85%)
Frame = -3
Query: 605 LWIDDVRYELRELYGIGSSTAADFDDNDPQKECVICMTEPKDTAVLPCRHMCMCSDCAKE 426
LW++ RYEL+E+YGIG+S D + NDP KECVIC++EP+DT VLPCRHMCMCS+CAK
Sbjct: 311 LWVNGTRYELQEIYGIGNSVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKV 370
Query: 425 LRLQSNKCPICRQPIEELIEIKINN 351
LR Q+N+CPICRQP+E L+EIK+NN
Sbjct: 371 LRYQTNRCPICRQPVERLLEIKVNN 395
>ref|NP_566356.1| expressed protein; protein id: At3g09770.1, supported by cDNA:
38757., supported by cDNA: gi_18377643 [Arabidopsis
thaliana] gi|6681341|gb|AAF23258.1|AC015985_16 putative
RING zinc finger protein [Arabidopsis thaliana]
gi|6682260|gb|AAF23312.1|AC016661_37 unknown protein
[Arabidopsis thaliana] gi|18377644|gb|AAL66972.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|21593417|gb|AAM65384.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 388
Score = 133 bits (335), Expect = 2e-30
Identities = 59/92 (64%), Positives = 73/92 (79%), Gaps = 6/92 (6%)
Frame = -3
Query: 605 LWIDDVRYELRELYGIGSSTAADFDD----NDPQKECVICMTEPKDTAVLPCRHMCMCSD 438
LW++ RYEL+E+YGIG++ D D NDP KECVIC++EP+DT VLPCRHMCMCS
Sbjct: 283 LWVNGTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSG 342
Query: 437 CAKELRLQSNKCPICRQPIEELIEIKI--NNG 348
CAK LR Q+N+CPICRQP+E L+EIK+ NNG
Sbjct: 343 CAKVLRFQTNRCPICRQPVERLLEIKVHGNNG 374
>ref|NP_197409.1| unknown protein; protein id: At5g19080.1 [Arabidopsis thaliana]
Length = 378
Score = 133 bits (334), Expect = 2e-30
Identities = 60/94 (63%), Positives = 76/94 (80%), Gaps = 4/94 (4%)
Frame = -3
Query: 605 LWIDDVRYELRELYGIGSS----TAADFDDNDPQKECVICMTEPKDTAVLPCRHMCMCSD 438
LWI+ RYEL+ELYGI +S TAA ++ KECVIC+TEPKDTAV+PCRH+C+CSD
Sbjct: 285 LWIEGERYELQELYGIDNSITQGTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSD 344
Query: 437 CAKELRLQSNKCPICRQPIEELIEIKINNGDQ*H 336
CA+ELR Q+NKCPICRQPI EL++IK+ + D+ H
Sbjct: 345 CAEELRFQTNKCPICRQPIHELVKIKVESSDEQH 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,670,052
Number of Sequences: 1393205
Number of extensions: 10170698
Number of successful extensions: 26866
Number of sequences better than 10.0: 952
Number of HSP's better than 10.0 without gapping: 25617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26500
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
