Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001589A_C01 KMC001589A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86280 protein T5E21.13 [imported] - Arabidopsis thaliana g... 35 0.70
ref|NP_172916.1| splicing factor, putative; protein id: At1g1464... 35 0.70
dbj|BAB90159.1| P0408G07.5 [Oryza sativa (japonica cultivar-group)] 35 0.92
gb|AAK56246.1|AF367257_1 AT3g22390/MCB17_12 [Arabidopsis thaliana] 34 1.6
dbj|BAB01776.1| gene_id:MCB17.12~unknown protein [Arabidopsis th... 34 1.6
>pir||G86280 protein T5E21.13 [imported] - Arabidopsis thaliana
gi|7527720|gb|AAF63169.1|AC010657_5 T5E21.13
[Arabidopsis thaliana]
Length = 1776
Score = 35.0 bits (79), Expect = 0.70
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -3
Query: 550 DGHNDTVSLIANQSRLEDNNVGENARSSPGRFSDASTMRGSISFRTMEKGVTSTGPF--- 380
DGH ++ ANQ+ +++ N G + D ++ G +F GV + P
Sbjct: 641 DGHTGSIGRTANQALTQNS----NGEQGDGVYGDPNSFPGPAAFPPPRPGVPTVRPLPPP 696
Query: 379 --VELSLFSPSHSATPPGSPPLLLGWPMRSP 293
+ L+L P S PG+ P LG PM P
Sbjct: 697 QNLALNLPRPPPSVQYPGA-PRPLGVPMMQP 726
>ref|NP_172916.1| splicing factor, putative; protein id: At1g14640.1 [Arabidopsis
thaliana]
Length = 735
Score = 35.0 bits (79), Expect = 0.70
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -3
Query: 550 DGHNDTVSLIANQSRLEDNNVGENARSSPGRFSDASTMRGSISFRTMEKGVTSTGPF--- 380
DGH ++ ANQ+ +++ N G + D ++ G +F GV + P
Sbjct: 494 DGHTGSIGRTANQALTQNS----NGEQGDGVYGDPNSFPGPAAFPPPRPGVPTVRPLPPP 549
Query: 379 --VELSLFSPSHSATPPGSPPLLLGWPMRSP 293
+ L+L P S PG+ P LG PM P
Sbjct: 550 QNLALNLPRPPPSVQYPGA-PRPLGVPMMQP 579
>dbj|BAB90159.1| P0408G07.5 [Oryza sativa (japonica cultivar-group)]
Length = 397
Score = 34.7 bits (78), Expect = 0.92
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = -3
Query: 553 NDGHNDTVSLIANQSRLEDNNVGENARSSPGRFSDASTMRGSISFRTM-------EKGVT 395
+D + + SL+ANQS E R SD ST RGSISFRTM + GV
Sbjct: 312 DDYYYEGASLVANQSFREIE-----------RNSDTSTKRGSISFRTMIREDQLQQDGVD 360
Query: 394 STGPFVELSLFSPSH--SATPPGSPP 323
G S S +H S +P GS P
Sbjct: 361 EIG----FSSRSGAHIGSPSPSGSSP 382
>gb|AAK56246.1|AF367257_1 AT3g22390/MCB17_12 [Arabidopsis thaliana]
Length = 1444
Score = 33.9 bits (76), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 463 GRFSDASTMRGSISFRTMEKGVTSTGPFVELSLFSPSHSATPPGSPPLLLGWP 305
G+ A+ + S R G+TS+GP + + S SATP G+P + +P
Sbjct: 764 GQQPHAAATIAAASVRPPNSGITSSGPTATSTSMNGSASATPAGAPTMSFSYP 816
>dbj|BAB01776.1| gene_id:MCB17.12~unknown protein [Arabidopsis thaliana]
Length = 1532
Score = 33.9 bits (76), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 463 GRFSDASTMRGSISFRTMEKGVTSTGPFVELSLFSPSHSATPPGSPPLLLGWP 305
G+ A+ + S R G+TS+GP + + S SATP G+P + +P
Sbjct: 746 GQQPHAAATIAAASVRPPNSGITSSGPTATSTSMNGSASATPAGAPTMSFSYP 798
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,408,255
Number of Sequences: 1393205
Number of extensions: 12291227
Number of successful extensions: 35858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 34481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35831
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
