Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001588A_C01 KMC001588A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD22260.1| maturase [Eremosyne pectinata] 33 1.1
gb|AAM97694.1|AF463413_1 cytochrome oxidase subunit 1 [Pfiesteri... 33 1.5
ref|NP_181151.1| hypothetical protein; protein id: At2g36070.1 [... 33 1.5
dbj|BAC42244.1| putative RAV2-like DNA binding protein [Arabidop... 33 1.5
dbj|BAA22645.1| photosynthetic reaction center L subunit [Rhodoc... 32 2.6
>emb|CAD22260.1| maturase [Eremosyne pectinata]
Length = 481
Score = 33.5 bits (75), Expect = 1.1
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -2
Query: 256 DQNAPTMVTLCL*TRAPDTNHHFYQYSSNSHSNSNPHMVPHQSYYY*MLEIGFSIVLSTA 77
D + ++ L TR NH S++ SN NP + +++ YY M+ GFS++L
Sbjct: 22 DNKSSLLIVKRLITRMSQQNHFVL---SDNDSNQNPLLGHNKNLYYQMISEGFSVILEIP 78
Query: 76 YN 71
++
Sbjct: 79 FS 80
>gb|AAM97694.1|AF463413_1 cytochrome oxidase subunit 1 [Pfiesteria piscicida]
Length = 482
Score = 33.1 bits (74), Expect = 1.5
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 7/84 (8%)
Frame = -3
Query: 237 W*HCAYEPGHQIPITIFISTLLILILIPT-------LTWYLTNPTTTRCWRLDSQLFCLQ 79
W H Y G + + S + ILI +PT L+ YL NP R S LF L
Sbjct: 289 WGHHMYTVGLETDTRAYFSGVTILISLPTGTKIFNWLSTYLGNPALL-LLRTSSSLFALL 347
Query: 78 LTTMYRLG*LL*LLLINESIYLSL 7
M+ +G ++L N ++ L+L
Sbjct: 348 FLLMFTIGGSTGVILGNAAVDLAL 371
>ref|NP_181151.1| hypothetical protein; protein id: At2g36070.1 [Arabidopsis
thaliana] gi|25370689|pir||E84776 hypothetical protein
At2g36070 [imported] - Arabidopsis thaliana
gi|20197991|gb|AAM15344.1| hypothetical protein
[Arabidopsis thaliana]
Length = 499
Score = 33.1 bits (74), Expect = 1.5
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = -1
Query: 308 LRLFGVNMECQAEHDDSGPECSYNGDTVPMN 216
LRLFGVNMECQ + D S P +T N
Sbjct: 24 LRLFGVNMECQLDSDWSEPSTPDGSNTYTTN 54
>dbj|BAC42244.1| putative RAV2-like DNA binding protein [Arabidopsis thaliana]
Length = 244
Score = 33.1 bits (74), Expect = 1.5
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = -1
Query: 308 LRLFGVNMECQAEHDDSGPECSYNGDTVPMN 216
LRLFGVNMECQ + D S P +T N
Sbjct: 183 LRLFGVNMECQLDSDWSEPSTPDGSNTYTTN 213
>dbj|BAA22645.1| photosynthetic reaction center L subunit [Rhodocyclus tenuis]
Length = 253
Score = 32.3 bits (72), Expect = 2.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 240 QW*HCAYEPGHQIPITIFISTLLILILIPTLTWYLTNP 127
Q+ H Y PGH + I F +T L L L +L TNP
Sbjct: 143 QYLHFHYNPGHMLGIAFFFTTTLALALHGSLILSATNP 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,056,468
Number of Sequences: 1393205
Number of extensions: 8544853
Number of successful extensions: 26162
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 23713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25706
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
