Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001587A_C01 KMC001587A_c01
(387 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO49694.1| hypothetical protein [Dictyostelium discoideum] 33 1.1
ref|NP_476535.1| galectin-related inter-fiber protein [Rattus no... 33 1.1
pir||YKPSCA citrate (si)-synthase (EC 4.1.3.7) - Pseudomonas aer... 31 3.3
gb|AAA25769.1| citrate synthase 31 3.3
ref|NP_083929.1| death associated protein kinase 1 [Mus musculus... 31 3.3
>gb|AAO49694.1| hypothetical protein [Dictyostelium discoideum]
Length = 1652
Score = 32.7 bits (73), Expect = 1.1
Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 12/94 (12%)
Frame = -2
Query: 251 IQSNLGLPC--RYYPNIVDIVLTFVY-IRCKSLCLC---------GKLIIFIEVTWSWKC 108
IQS G+ C + PN++ +L VY I SL L G++IIF+++
Sbjct: 1228 IQSKNGIRCCSSFKPNLIIPILIIVYLIFGYSLSLLKYNLLEKPIGQIIIFLQINSVVFF 1287
Query: 107 SVSNVWLSPTFLVSSDLEYKSCCSDGIIQS*KTF 6
S S V++ P F +S DL C G+ + K F
Sbjct: 1288 SYSGVYILPLFRMSIDLFDGVCLFKGLNANYKFF 1321
>ref|NP_476535.1| galectin-related inter-fiber protein [Rattus norvegicus]
gi|3420875|gb|AAC71765.1| GRIFIN [Rattus norvegicus]
Length = 144
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 100 DTEHFHDHVTSINIINLPHKHKDLHRIYTKVSTIS 204
DTEHFH + ++ PH+H+ L I T+V +S
Sbjct: 90 DTEHFHIYAQEQKVLQFPHRHRPLATI-TRVRVLS 123
>pir||YKPSCA citrate (si)-synthase (EC 4.1.3.7) - Pseudomonas aeruginosa
Length = 428
Score = 31.2 bits (69), Expect = 3.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 112 FHDHVTSINIINLPHKHKDLHRIYTKVSTISTMLG*YLHGKPKL 243
+HD S++I N H+ HR+ K+ TI+ M+ Y G+P +
Sbjct: 146 YHD---SLDITNPKHREVSAHRLIAKMPTIAAMVYKYSKGEPMM 186
>gb|AAA25769.1| citrate synthase
Length = 428
Score = 31.2 bits (69), Expect = 3.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 112 FHDHVTSINIINLPHKHKDLHRIYTKVSTISTMLG*YLHGKPKL 243
+HD S++I N H+ HR+ K+ TI+ M+ Y G+P +
Sbjct: 146 YHD---SLDITNPKHRQVSAHRLIAKMPTIAAMVYKYSKGEPMM 186
>ref|NP_083929.1| death associated protein kinase 1 [Mus musculus]
gi|7414392|emb|CAA65762.1| death associated protein
kinase [Mus musculus]
Length = 1430
Score = 31.2 bits (69), Expect = 3.3
Identities = 14/32 (43%), Positives = 17/32 (52%)
Frame = -2
Query: 323 SHFTNSELEKLLHLPDPKSPTWTTIQSNLGLP 228
S T +L +LL PDP W + NLGLP
Sbjct: 1306 SLLTRRKLSRLLDPPDPMGKDWCLLAMNLGLP 1337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,963,391
Number of Sequences: 1393205
Number of extensions: 6558133
Number of successful extensions: 16289
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 15905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16285
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
