Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001586A_C01 KMC001586A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ARF9|HPPD_SOLSC 4-hydroxyphenylpyruvate dioxygenase (4HPPD)... 169 2e-41
sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD)... 164 7e-40
pir||B86201 protein F12K11.9 [imported] - Arabidopsis thaliana g... 160 6e-39
gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidop... 160 6e-39
gb|AAC62457.1| p-hydroxyphenylpyruvate dioxygenase [Arabidopsis ... 160 6e-39
>sp|Q9ARF9|HPPD_SOLSC 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
gi|13810184|emb|CAC37394.1| 4-hydroxyphenylpyruvate
dioxygenase [Solenostemon scutellarioides]
Length = 436
Score = 169 bits (427), Expect = 2e-41
Identities = 81/122 (66%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Frame = +3
Query: 141 MGKQTTTTEEVQTG-FKLLGFNRFVRSNPKSDRFAVKRFHHIEFWCSDATNAARRFSWGL 317
MG+++T V FKL+G FVRSNP SD F V RFHH+EFWC DATN +RRFSWGL
Sbjct: 1 MGQESTAAAAVVPAEFKLVGHKNFVRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGL 60
Query: 318 GMPLVAKSDLSTGNHSHASYLLRSGDLCFLFSAPYSPKISLPSTASIPTFSASTCFAFSA 497
GMPLVAKSDLSTGN +HASYLLRSG+L F+F+APYSP ++ PS+ASIPTFS S AF++
Sbjct: 61 GMPLVAKSDLSTGNSAHASYLLRSGELSFVFTAPYSPSLAEPSSASIPTFSFSDHRAFTS 120
Query: 498 AH 503
+H
Sbjct: 121 SH 122
>sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
gi|7459542|pir||T14353 probable 4-hydroxyphenylpyruvate
dioxygenase (EC 1.13.11.27) - carrot
gi|2231615|gb|AAC49815.1| 4-hydroxyphenylpyruvate
dioxygenase [Daucus carota]
Length = 442
Score = 164 bits (414), Expect = 7e-40
Identities = 82/130 (63%), Positives = 99/130 (76%), Gaps = 9/130 (6%)
Frame = +3
Query: 141 MGKQTTTTEEVQTG--------FKLLGFNRFVRSNPKSDRFAVKRFHHIEFWCSDATNAA 296
MGK+ + E + + FKL+GFN FVR+NPKSD FAVKRFHHIEFWC DATN +
Sbjct: 1 MGKKQSEAEILSSNSSNTSPATFKLVGFNNFVRANPKSDHFAVKRFHHIEFWCGDATNTS 60
Query: 297 RRFSWGLGMPLVAKSDLSTGNHSHASYLLRSGDLCFLFSAPYSPKISLPS-TASIPTFSA 473
RRFSWGLGMPLVAKSDLSTGN HASYL+RS +L F+F+APYSP + S +A+IP+FSA
Sbjct: 61 RRFSWGLGMPLVAKSDLSTGNSVHASYLVRSANLSFVFTAPYSPSTTTSSGSAAIPSFSA 120
Query: 474 STCFAFSAAH 503
S +F+A H
Sbjct: 121 SGFHSFAAKH 130
>pir||B86201 protein F12K11.9 [imported] - Arabidopsis thaliana
gi|6692679|gb|AAF24813.1|AC007592_6 F12K11.9
[Arabidopsis thaliana]
Length = 473
Score = 160 bits (406), Expect = 6e-39
Identities = 82/135 (60%), Positives = 94/135 (68%), Gaps = 14/135 (10%)
Frame = +3
Query: 141 MGKQTTTTEEVQT---------GFKLLGFNRFVRSNPKSDRFAVKRFHHIEFWCSDATNA 293
MG Q E Q GFKL+GF++FVR NPKSD+F VKRFHHIEFWC DATN
Sbjct: 29 MGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNV 88
Query: 294 ARRFSWGLGMPLVAKSDLSTGNHSHASYLLRSGDLCFLFSAPYSPKISL-----PSTASI 458
ARRFSWGLGM AKSDLSTGN HASYLL SGDL FLF+APYSP +S +TASI
Sbjct: 89 ARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASI 148
Query: 459 PTFSASTCFAFSAAH 503
P+F +C +F ++H
Sbjct: 149 PSFDHGSCRSFFSSH 163
>gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidopsis thaliana]
Length = 473
Score = 160 bits (406), Expect = 6e-39
Identities = 82/135 (60%), Positives = 94/135 (68%), Gaps = 14/135 (10%)
Frame = +3
Query: 141 MGKQTTTTEEVQT---------GFKLLGFNRFVRSNPKSDRFAVKRFHHIEFWCSDATNA 293
MG Q E Q GFKL+GF++FVR NPKSD+F VKRFHHIEFWC DATN
Sbjct: 29 MGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNV 88
Query: 294 ARRFSWGLGMPLVAKSDLSTGNHSHASYLLRSGDLCFLFSAPYSPKISL-----PSTASI 458
ARRFSWGLGM AKSDLSTGN HASYLL SGDL FLF+APYSP +S +TASI
Sbjct: 89 ARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASI 148
Query: 459 PTFSASTCFAFSAAH 503
P+F +C +F ++H
Sbjct: 149 PSFDHGSCRSFFSSH 163
>gb|AAC62457.1| p-hydroxyphenylpyruvate dioxygenase [Arabidopsis thaliana]
Length = 419
Score = 160 bits (406), Expect = 6e-39
Identities = 82/135 (60%), Positives = 94/135 (68%), Gaps = 14/135 (10%)
Frame = +3
Query: 141 MGKQTTTTEEVQT---------GFKLLGFNRFVRSNPKSDRFAVKRFHHIEFWCSDATNA 293
MG Q E Q GFKL+GF++FVR NPKSD+F VKRFHHIEFWC DATN
Sbjct: 1 MGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNV 60
Query: 294 ARRFSWGLGMPLVAKSDLSTGNHSHASYLLRSGDLCFLFSAPYSPKISL-----PSTASI 458
ARRFSWGLGM AKSDLSTGN HASYLL SGDL FLF+APYSP +S +TASI
Sbjct: 61 ARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASI 120
Query: 459 PTFSASTCFAFSAAH 503
P+F +C +F ++H
Sbjct: 121 PSFDHGSCRSFFSSH 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.309 0.123 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,002,347
Number of Sequences: 1393205
Number of extensions: 19601150
Number of successful extensions: 644499
Number of sequences better than 10.0: 20704
Number of HSP's better than 10.0 without gapping: 119568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346894
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
