Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001582A_C01 KMC001582A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana] 47 2e-04
ref|NP_564406.1| expressed protein; protein id: At1g32700.1, sup... 47 2e-04
gb|AAM63219.1| unknown [Arabidopsis thaliana] 47 2e-04
gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa] 35 0.42
ref|NP_193524.1| putative protein; protein id: At4g17900.1 [Arab... 35 0.55
>gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana]
Length = 270
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 531 PPTSVNYRTAKRRKGIPHRAPMVGLVIEY 445
P ++VN R AKRRKGIPHRAP GL+IEY
Sbjct: 242 PLSAVNRRIAKRRKGIPHRAPFGGLIIEY 270
>ref|NP_564406.1| expressed protein; protein id: At1g32700.1, supported by cDNA:
206224. [Arabidopsis thaliana]
Length = 213
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 531 PPTSVNYRTAKRRKGIPHRAPMVGLVIEY 445
P ++VN R AKRRKGIPHRAP GL+IEY
Sbjct: 185 PLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213
>gb|AAM63219.1| unknown [Arabidopsis thaliana]
Length = 213
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 531 PPTSVNYRTAKRRKGIPHRAPMVGLVIEY 445
P ++VN R AKRRKGIPHRAP GL+IEY
Sbjct: 185 PLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213
>gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa]
Length = 254
Score = 35.4 bits (80), Expect = 0.42
Identities = 14/19 (73%), Positives = 16/19 (83%)
Frame = -1
Query: 501 KRRKGIPHRAPMVGLVIEY 445
KRRKGIPHRAP L++EY
Sbjct: 236 KRRKGIPHRAPFGSLIVEY 254
>ref|NP_193524.1| putative protein; protein id: At4g17900.1 [Arabidopsis thaliana]
gi|7460098|pir||T05076 hypothetical protein T6K21.80 -
Arabidopsis thaliana gi|2894599|emb|CAA17133.1| putative
protein [Arabidopsis thaliana]
gi|7268542|emb|CAB78792.1| putative protein [Arabidopsis
thaliana]
Length = 254
Score = 35.0 bits (79), Expect = 0.55
Identities = 17/24 (70%), Positives = 18/24 (74%), Gaps = 2/24 (8%)
Frame = -1
Query: 531 PP--TSVNYRTAKRRKGIPHRAPM 466
PP TS N R KRRKGIPHR+PM
Sbjct: 230 PPLTTSSNCRIVKRRKGIPHRSPM 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,315,150
Number of Sequences: 1393205
Number of extensions: 10215195
Number of successful extensions: 18811
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18790
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
