Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001577A_C02 KMC001577A_c02
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21708.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.68
ref|NP_192654.1| putative protein; protein id: At4g09150.1 [Arab... 33 3.4
ref|NP_609573.1| CG15489-PA [Drosophila melanogaster] gi|1072874... 32 5.7
>gb|EAA21708.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 478
Score = 35.0 bits (79), Expect = 0.68
Identities = 23/75 (30%), Positives = 37/75 (48%)
Frame = -2
Query: 273 HFLMMVQILKGSKFDNISLLFSVPLFFLSWELGLCKSHSFFIANELHLMQISVWISIC*L 94
H L L G K ++L S+ L + + + S I N+ ++++I VWIS+C
Sbjct: 233 HILNKYGYLPGDKITKLNLYVSLMLIYFIYSIIWSYS---LIKNKANVIKIQVWISVCIF 289
Query: 93 AYEGNILCHLYIYFL 49
Y L LY+YF+
Sbjct: 290 LYLLENL-FLYLYFM 303
>ref|NP_192654.1| putative protein; protein id: At4g09150.1 [Arabidopsis thaliana]
gi|25372860|pir||G85092 hypothetical protein AT4g09150
[imported] - Arabidopsis thaliana
gi|7267558|emb|CAB78039.1| putative protein [Arabidopsis
thaliana]
Length = 1097
Score = 32.7 bits (73), Expect = 3.4
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -1
Query: 406 QEWEEHVNFASALASN-SFQE*LPSTTLRTEG--SGTIMLKTTSNP 278
+EW+EH + SA+ +N S LPSTT+RT G S + T S+P
Sbjct: 836 REWKEHKDALSAVINNHSGSSGLPSTTMRTGGNVSSVSKVNTPSSP 881
>ref|NP_609573.1| CG15489-PA [Drosophila melanogaster] gi|10728741|gb|AAF53202.2|
CG15489-PA [Drosophila melanogaster]
Length = 300
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 532 NLPLHSSTVVYCISYWLRMCYY-WFSI*IDSNIQSNRGTQTFNQEWEEHVNFASALASNS 356
+LP HS + YW + +I + QS T F+ ++HVNFA++L +
Sbjct: 161 HLPTHSLQHLIAAEYWQQQQQQPAATIKSEPTTQSVAATSVFSFTPQQHVNFAASLVALQ 220
Query: 355 FQE*LPSTTLRT 320
+ LP T+ T
Sbjct: 221 QNDALPEETMAT 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,113,839
Number of Sequences: 1393205
Number of extensions: 9294965
Number of successful extensions: 25423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25414
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
