KMC001575A_c03
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001575A_C03 KMC001575A_c03
agacCCTGCAAAATTAAAATTCATAAATTATTGGGAATTCGAAATGGTTAACTTCATCCG
TGCAAAATTAAAATTACAATTCAACATAGCACCAAAAAGGAAATGGCAATTCAAAGAAAC
TAGATGATGATCCTAAGTTCTAAAAGCAAATAAACAAGAGAGTCGAAGCTCATAGCAACA
ATTATAACCAAGTACCCTATTTACAATTCAATCCATAAGGTAAAAAAGTGCAGTGAAAAA
AATGCTCAGAAGCAAGTCAGTGGTCATGGTGAGGATGAAGAGAAAATCCTTGAAAATTCT
CACTCATCGAAGCTCCAAAGATCCCCTACCTCACTTTCCTGAACACTATTATTCTCTGCC
ACCGATGGTCCATCATAGTACGGAATCTGGTAGAATTTCATGTAATTCTCGTACGCCATC
AGCTCATCCGACAGCTCCTGCACTTCGTTCTTCGCCGCCGCTTCAGCTTCTTCAACCACC
TCTGTTTTCTGCTCTGTTTCTTTCTCCTTTTCCTTCTCCTTCAAACCACCGCCAAAGTAA
CCGTTCCCGATCTGCTCAGAGCCCATGAACTCCATTGGTGAGTAACCACCACCCTCTGAG
CCTGTTCCGGATCCTAATCCAGACCCTGACCCTGAATTTTCATCAACAGATACCAGAACA
GAGTCAGTGCTGATTCCACCCACGTGGGGAGGA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001575A_C03 KMC001575A_c03
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AA... 71 1e-11
gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum] 68 1e-10
dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-gro... 56 5e-07
ref|NP_182274.1| putative AP2 domain transcription factor; prote... 52 1e-05
pir||C29356 hydroxyproline-rich glycoprotein (clone Hyp2.13) - k... 32 0.003
>pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AAC29516.1| DNA
binding protein homolog [Solanum tuberosum]
Length = 298
Score = 71.2 bits (173), Expect = 1e-11
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 9/100 (9%)
Frame = -2
Query: 575 MEFMGSEQIGNGYFGGGLKEKEKEKETE----QKTEVVEEAEAAAKNEVQELSDELMAYE 408
MEF + + +G G++++ E E + +VEE E ++EVQ LSDELMAYE
Sbjct: 173 MEFAIANKNSSGSAYNGIEDQNVEGEEQTVKNSNNRIVEEEEKT-EDEVQILSDELMAYE 231
Query: 407 NYMKFYQIPYYDGPSVAEN-NSVQESEVG----DLWSFDE 303
+ MKFY+IPY DG SVA N ++EVG +LWSFD+
Sbjct: 232 SLMKFYEIPYVDGQSVAATVNPAADTEVGGGSMELWSFDD 271
>gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum]
Length = 260
Score = 67.8 bits (164), Expect = 1e-10
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Frame = -2
Query: 527 GLKEKEKEKETEQKTEVVEEAEAAAKNEVQELSDELMAYENYMKFYQIPYYDGPSVAEN- 351
G+++ +E VVEE E ++EVQ LSDELMAYE+ MKFY+IPY DG SVA
Sbjct: 171 GIEDGGEEMVKNLNNRVVEEEEKT-EDEVQILSDELMAYESLMKFYEIPYVDGQSVAATV 229
Query: 350 NSVQESEVG----DLWSFDE 303
N E+ VG +LWSFD+
Sbjct: 230 NPAAETAVGGGSMELWSFDD 249
>dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-group)]
Length = 207
Score = 55.8 bits (133), Expect = 5e-07
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = -2
Query: 488 KTEVVEE-AEAAAKNEVQELSDELMAYENYMKFYQIPYYDGPSVAENNSVQESEVGDLWS 312
K E V E A A + +EV+ELS+EL+AYENYM F IPY +G + + + + + LW+
Sbjct: 137 KMEAVSEGAGACSSDEVKELSEELLAYENYMSFLGIPYMEGGAASAAGAEEAAAPAGLWT 196
Query: 311 FDE*E 297
F++ E
Sbjct: 197 FEDYE 201
>ref|NP_182274.1| putative AP2 domain transcription factor; protein id: At2g47520.1,
supported by cDNA: gi_18491272 [Arabidopsis thaliana]
gi|7487565|pir||T00432 probable AP2 domain transcription
factor [imported] - Arabidopsis thaliana
gi|2529675|gb|AAC62858.1| putative AP2 domain
transcription factor [Arabidopsis thaliana]
gi|18491273|gb|AAL69461.1| At2g47520/T30B22.18
[Arabidopsis thaliana]
Length = 171
Score = 51.6 bits (122), Expect = 1e-05
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Frame = -2
Query: 569 FMGSEQIGNGYFGGGLKEK-EKEKETEQKTEVVEEA---------EAAAKNEVQELSDEL 420
F +++ Y +K + K K T+V EEA E ++N+V+ LS++L
Sbjct: 79 FKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGGNQNELISENQVESLSEDL 138
Query: 419 MAYENYMKFYQIPYYDGPSVAENNSVQESEVGDLWSFDE 303
MA E+YM+FYQIP D S +++G+LWS+ +
Sbjct: 139 MALEDYMRFYQIPVADDQSA--------TDIGNLWSYQD 169
>pir||C29356 hydroxyproline-rich glycoprotein (clone Hyp2.13) - kidney bean
(fragment) gi|169349|gb|AAA33765.1| hydroxyproline-rich
glycoprotein
Length = 368
Score = 32.0 bits (71), Expect(2) = 0.003
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = +2
Query: 329 PHFPEHYYSLPPMVHHSTESGRISCNSRTPSAHPTAPALRSSPPLQLLQPPLFSALFLSP 508
P++P +YY PP S + PS P P SPP PP P
Sbjct: 153 PYYPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPP 212
Query: 509 FPSPS 523
PSPS
Sbjct: 213 PPSPS 217
Score = 30.8 bits (68), Expect(2) = 0.003
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = +1
Query: 526 PPPK*PFPICSEPMNSIGE*PPPSEPVPDPNPDPDPEF 639
PPP P P P + PPP P P P+P P P +
Sbjct: 227 PPPPSPSP----PPPYYYKSPPPPSPSPPPSPSPPPPY 260
Score = 28.1 bits (61), Expect(2) = 0.97
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Frame = +2
Query: 236 KKMLRSKSVVMVRMKRKSLKILT------HRSSKDPLPHFPEHYYSLPPMVHHSTESGRI 397
K L+SK V +K K + P P+ +YY+ PP ++
Sbjct: 68 KLALKSKDKYEVVLKAKPFAYAPKKPYDCEKHKHSPTPYHKPYYYNSPPPPYYYKSPPYY 127
Query: 398 SCNSRTPSAHPTAPALRSSPP--LQLLQPPLFSALFLSPFPSP 520
+ PS P+ +S PP PP + P PSP
Sbjct: 128 YKSPPPPSPSPSPYYYKSPPPPHKDPYYPPYYYKSPPPPSPSP 170
Score = 26.9 bits (58), Expect(2) = 1.6
Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +2
Query: 305 HRSSKDPLPHFPEHYYSLPPMVHHSTESGRISCNS-RTPSAHPTAPALRSSPPLQLLQPP 481
++S P P +YY PP H S PS P P SPP PP
Sbjct: 128 YKSPPPPSPSPSPYYYKSPPPPHKDPYYPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPP 187
Query: 482 LFSALFLSPFPSPS 523
P P PS
Sbjct: 188 PPYYYKSPPPPDPS 201
Score = 26.2 bits (56), Expect(2) = 1.6
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = +1
Query: 526 PPPK*PFPICSEPMNSIGE*PPPSEPVP-----DPNPDPDP 633
PPP P+ S P S P PS P P P PDP P
Sbjct: 234 PPP--PYYYKSPPPPSPSPPPSPSPPPPYYYKSPPPPDPSP 272
Score = 25.8 bits (55), Expect(2) = 0.97
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 3/43 (6%)
Frame = +1
Query: 526 PPPK*PFPICSEPMNSIGE*PP---PSEPVPDPNPDPDPEFSS 645
PPP P+ S P S PP S P PDP+P P + S
Sbjct: 170 PPP--PYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPYYYKS 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,888,184
Number of Sequences: 1393205
Number of extensions: 14788461
Number of successful extensions: 145216
Number of sequences better than 10.0: 649
Number of HSP's better than 10.0 without gapping: 74332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120315
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GENf056g11 |
BP060754 |
1 |
503 |
| 2 |
GNf053h08 |
BP071352 |
1 |
457 |
| 3 |
GENf066h03 |
BP061208 |
4 |
434 |
| 4 |
MR070g03_f |
BP081403 |
5 |
431 |
| 5 |
GENf005a03 |
BP058511 |
8 |
407 |
| 6 |
GENf016d12 |
BP059038 |
8 |
422 |
| 7 |
MR082a11_f |
BP082282 |
12 |
575 |
| 8 |
MR001d02_f |
BP075996 |
13 |
589 |
| 9 |
GENf056c03 |
BP060725 |
13 |
408 |
| 10 |
GNf069a12 |
BP072458 |
14 |
514 |
| 11 |
GNf027b06 |
BP069291 |
16 |
143 |
| 12 |
MR026d06_f |
BP077992 |
17 |
178 |
| 13 |
GENf009g09 |
BP058739 |
18 |
395 |
| 14 |
MR040h02_f |
BP079120 |
20 |
454 |
| 15 |
MR041e12_f |
BP079178 |
23 |
429 |
| 16 |
GNf065c06 |
BP072184 |
31 |
486 |
| 17 |
GNf042a10 |
BP070438 |
34 |
483 |
| 18 |
MR010c07_f |
BP076695 |
34 |
479 |
| 19 |
GNf051b08 |
BP071126 |
34 |
476 |
| 20 |
GENf086b01 |
BP061985 |
34 |
550 |
| 21 |
GENf024g08 |
BP059369 |
35 |
553 |
| 22 |
GENf059f07 |
BP060866 |
35 |
596 |
| 23 |
MR035c05_f |
BP078690 |
36 |
392 |
| 24 |
GENf064f07 |
BP061096 |
36 |
429 |
| 25 |
GNf059d02 |
BP071750 |
36 |
480 |
| 26 |
MR009a02_f |
BP076593 |
37 |
541 |
| 27 |
MR043h01_f |
BP079360 |
43 |
469 |
| 28 |
MR065g04_f |
BP081022 |
51 |
552 |
| 29 |
GENf018a04 |
BP059109 |
51 |
448 |
| 30 |
GNf035b12 |
BP069893 |
52 |
617 |
| 31 |
MR087d04_f |
BP082681 |
54 |
554 |
| 32 |
MR088b05_f |
BP082738 |
54 |
534 |
| 33 |
GENf029g06 |
BP059593 |
55 |
457 |
| 34 |
MR088d07_f |
BP082761 |
65 |
596 |
| 35 |
SPDL003a12_f |
BP052152 |
70 |
456 |
| 36 |
MR042g04_f |
BP079275 |
92 |
493 |
| 37 |
MR063d01_f |
BP080826 |
92 |
513 |
| 38 |
GNf056b11 |
BP071526 |
92 |
522 |
| 39 |
GNf066e06 |
BP072274 |
92 |
526 |
| 40 |
GENf092f02 |
BP062206 |
92 |
427 |
| 41 |
MR063g09_f |
BP080864 |
92 |
509 |
| 42 |
GENf041e08 |
BP060102 |
92 |
480 |
| 43 |
GNf094d10 |
BP074328 |
102 |
266 |
| 44 |
MWM065g05_f |
AV765751 |
110 |
589 |
| 45 |
GNf034b08 |
BP069824 |
127 |
672 |
| 46 |
MR060e05_f |
BP080608 |
172 |
596 |
| 47 |
GNf043e01 |
BP070534 |
180 |
564 |
| 48 |
GNf060c08 |
BP071817 |
201 |
736 |
|
Lotus japonicus
Kazusa DNA Research Institute