Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001574A_C01 KMC001574A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44087.2|AF370272_1 unknown protein [Arabidopsis thaliana] 191 5e-48
gb|AAN41287.1| unknown protein [Arabidopsis thaliana] 191 5e-48
ref|NP_193723.1| putative protein; protein id: At4g19880.1, supp... 191 5e-48
ref|NP_199315.1| putative protein; protein id: At5g45020.1, supp... 189 2e-47
pir||T04769 hypothetical protein T16H5.240 - Arabidopsis thalian... 176 1e-43
>gb|AAK44087.2|AF370272_1 unknown protein [Arabidopsis thaliana]
Length = 352
Score = 191 bits (484), Expect = 5e-48
Identities = 85/99 (85%), Positives = 92/99 (92%)
Frame = -1
Query: 511 YLCGNTLTEADIRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYVKDIFQIPGVSNTVN 332
Y+CGNTLTE DIRLFVTLIRFDEVYAVHFKCNKKL+REYPNLFNY KDIFQIPG+S+TVN
Sbjct: 253 YICGNTLTETDIRLFVTLIRFDEVYAVHFKCNKKLIREYPNLFNYTKDIFQIPGMSSTVN 312
Query: 331 MEHIKLHYYGSHPSINPFAIVPAGPNIDYSAPHDRERFS 215
M HIK HYYGSHPSINPF I+P GPNIDY++PHDR RFS
Sbjct: 313 MNHIKQHYYGSHPSINPFGIIPHGPNIDYTSPHDRHRFS 351
>gb|AAN41287.1| unknown protein [Arabidopsis thaliana]
Length = 356
Score = 191 bits (484), Expect = 5e-48
Identities = 85/99 (85%), Positives = 92/99 (92%)
Frame = -1
Query: 511 YLCGNTLTEADIRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYVKDIFQIPGVSNTVN 332
Y+CGNTLTE DIRLFVTLIRFDEVYAVHFKCNKKL+REYPNLFNY KDIFQIPG+S+TVN
Sbjct: 257 YICGNTLTETDIRLFVTLIRFDEVYAVHFKCNKKLIREYPNLFNYTKDIFQIPGMSSTVN 316
Query: 331 MEHIKLHYYGSHPSINPFAIVPAGPNIDYSAPHDRERFS 215
M HIK HYYGSHPSINPF I+P GPNIDY++PHDR RFS
Sbjct: 317 MNHIKQHYYGSHPSINPFGIIPHGPNIDYTSPHDRHRFS 355
>ref|NP_193723.1| putative protein; protein id: At4g19880.1, supported by cDNA:
gi_13878018, supported by cDNA: gi_17065589 [Arabidopsis
thaliana]
Length = 239
Score = 191 bits (484), Expect = 5e-48
Identities = 85/99 (85%), Positives = 92/99 (92%)
Frame = -1
Query: 511 YLCGNTLTEADIRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYVKDIFQIPGVSNTVN 332
Y+CGNTLTE DIRLFVTLIRFDEVYAVHFKCNKKL+REYPNLFNY KDIFQIPG+S+TVN
Sbjct: 140 YICGNTLTETDIRLFVTLIRFDEVYAVHFKCNKKLIREYPNLFNYTKDIFQIPGMSSTVN 199
Query: 331 MEHIKLHYYGSHPSINPFAIVPAGPNIDYSAPHDRERFS 215
M HIK HYYGSHPSINPF I+P GPNIDY++PHDR RFS
Sbjct: 200 MNHIKQHYYGSHPSINPFGIIPHGPNIDYTSPHDRHRFS 238
>ref|NP_199315.1| putative protein; protein id: At5g45020.1, supported by cDNA:
gi_14030630 [Arabidopsis thaliana]
gi|10177494|dbj|BAB10885.1|
gene_id:K21C13.21~pir||T04769~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|14030631|gb|AAK52990.1|AF375406_1 AT5g45020/K21C13_21
[Arabidopsis thaliana] gi|23308293|gb|AAN18116.1|
At5g45020/K21C13_21 [Arabidopsis thaliana]
Length = 325
Score = 189 bits (480), Expect = 2e-47
Identities = 83/100 (83%), Positives = 95/100 (95%)
Frame = -1
Query: 511 YLCGNTLTEADIRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYVKDIFQIPGVSNTVN 332
Y+CGNT TEADIRLFVTLIRFDEVYAVHFKCNK+LLREYPN+FNY+KDI+QI G+S+TVN
Sbjct: 226 YICGNTFTEADIRLFVTLIRFDEVYAVHFKCNKRLLREYPNIFNYIKDIYQIHGMSSTVN 285
Query: 331 MEHIKLHYYGSHPSINPFAIVPAGPNIDYSAPHDRERFSA 212
MEHIK HYYGSHP+INPF I+P GPNIDYS+PHDR+RFS+
Sbjct: 286 MEHIKQHYYGSHPTINPFGIIPHGPNIDYSSPHDRDRFSS 325
>pir||T04769 hypothetical protein T16H5.240 - Arabidopsis thaliana (fragment)
gi|25346660|pir||E85225 hypothetical protein AT4g19880
[imported] - Arabidopsis thaliana
gi|3250697|emb|CAA19705.1| putative protein [Arabidopsis
thaliana] gi|7268784|emb|CAB78990.1| putative protein
[Arabidopsis thaliana]
Length = 280
Score = 176 bits (447), Expect = 1e-43
Identities = 85/125 (68%), Positives = 92/125 (73%), Gaps = 26/125 (20%)
Frame = -1
Query: 511 YLCGNTLTEADIRLFVTLIRFDEV--------------------------YAVHFKCNKK 410
Y+CGNTLTE DIRLFVTLIRFDEV YAVHFKCNKK
Sbjct: 155 YICGNTLTETDIRLFVTLIRFDEVSSYFQSKKKKYTICERISNVETLIQVYAVHFKCNKK 214
Query: 409 LLREYPNLFNYVKDIFQIPGVSNTVNMEHIKLHYYGSHPSINPFAIVPAGPNIDYSAPHD 230
L+REYPNLFNY KDIFQIPG+S+TVNM HIK HYYGSHPSINPF I+P GPNIDY++PHD
Sbjct: 215 LIREYPNLFNYTKDIFQIPGMSSTVNMNHIKQHYYGSHPSINPFGIIPHGPNIDYTSPHD 274
Query: 229 RERFS 215
R RFS
Sbjct: 275 RHRFS 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,495,516
Number of Sequences: 1393205
Number of extensions: 7644711
Number of successful extensions: 19210
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 18795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19197
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
