Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001569A_C01 KMC001569A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC06095.1| ferredoxin-nitrite reductase [Lotus japonicus] 186 3e-46
pir||S51945 ferredoxin-nitrite reductase (EC 1.7.7.1) precursor ... 169 2e-41
pir||T08847 ferredoxin-nitrite reductase (EC 1.7.7.1) - soybean ... 169 2e-41
dbj|BAB55003.1| nitrite reductase [Prunus persica] 166 3e-40
sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplast p... 157 1e-37
>emb|CAC06095.1| ferredoxin-nitrite reductase [Lotus japonicus]
Length = 582
Score = 186 bits (471), Expect = 3e-46
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = -2
Query: 599 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 420
HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK
Sbjct: 497 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 556
Query: 419 DLVPIVADILVKHFGAVQRNREEGDD 342
DLVPIVADILVKHFGAVQRNREEGDD
Sbjct: 557 DLVPIVADILVKHFGAVQRNREEGDD 582
>pir||S51945 ferredoxin-nitrite reductase (EC 1.7.7.1) precursor - kidney bean
gi|500753|gb|AAA74456.1| nitrite reductase
Length = 582
Score = 169 bits (429), Expect = 2e-41
Identities = 78/86 (90%), Positives = 82/86 (94%)
Frame = -2
Query: 599 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 420
HWTGCPNTCGQVQVADIGFMGCMARDENGK EGVDIFLGGRIGSDSHLAE+YKK VPCK
Sbjct: 497 HWTGCPNTCGQVQVADIGFMGCMARDENGKATEGVDIFLGGRIGSDSHLAELYKKGVPCK 556
Query: 419 DLVPIVADILVKHFGAVQRNREEGDD 342
+LVP+VADILVKHFGAVQRNREE +D
Sbjct: 557 NLVPVVADILVKHFGAVQRNREEVED 582
>pir||T08847 ferredoxin-nitrite reductase (EC 1.7.7.1) - soybean
gi|1906002|gb|AAB50233.1| nitrite reductase [Glycine
max]
Length = 596
Score = 169 bits (429), Expect = 2e-41
Identities = 77/86 (89%), Positives = 81/86 (93%)
Frame = -2
Query: 599 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 420
HWTGCPNTCGQVQVADIGFMGCMARD+NGK EGVDIFLGGRIGSDSHLA+VYKK VPCK
Sbjct: 511 HWTGCPNTCGQVQVADIGFMGCMARDDNGKATEGVDIFLGGRIGSDSHLAQVYKKGVPCK 570
Query: 419 DLVPIVADILVKHFGAVQRNREEGDD 342
DLVP+V DILVKHFGAV RNREEG+D
Sbjct: 571 DLVPVVVDILVKHFGAVLRNREEGED 596
>dbj|BAB55003.1| nitrite reductase [Prunus persica]
Length = 532
Score = 166 bits (419), Expect = 3e-40
Identities = 74/86 (86%), Positives = 79/86 (91%)
Frame = -2
Query: 599 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 420
HWTGCPNTC QVQVADIGFMGCMARDENGKP EG D+FLGGRIGSDSHL +VYKK+VPCK
Sbjct: 447 HWTGCPNTCAQVQVADIGFMGCMARDENGKPCEGADVFLGGRIGSDSHLGDVYKKSVPCK 506
Query: 419 DLVPIVADILVKHFGAVQRNREEGDD 342
DLVP+V DILVKHFGAV R REEG+D
Sbjct: 507 DLVPLVVDILVKHFGAVPREREEGED 532
>sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplast precursor
gi|81443|pir||S20495 ferredoxin-nitrite reductase (EC
1.7.7.1) precursor - European white birch
gi|17927|emb|CAA42690.1| ferredoxin--nitrite reductase
[Betula pendula]
Length = 583
Score = 157 bits (396), Expect = 1e-37
Identities = 70/86 (81%), Positives = 76/86 (87%)
Frame = -2
Query: 599 HWTGCPNTCGQVQVADIGFMGCMARDENGKPGEGVDIFLGGRIGSDSHLAEVYKKAVPCK 420
HWTGCPN+CGQVQVADIGFMGCMARDENGKP EG +FLGGRIGSDSHL +YKK VPCK
Sbjct: 498 HWTGCPNSCGQVQVADIGFMGCMARDENGKPCEGAAVFLGGRIGSDSHLGNLYKKGVPCK 557
Query: 419 DLVPIVADILVKHFGAVQRNREEGDD 342
+LVP+V DILVKHFGAV R REE +D
Sbjct: 558 NLVPLVVDILVKHFGAVPREREESED 583
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,342,261
Number of Sequences: 1393205
Number of extensions: 11849334
Number of successful extensions: 29430
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 28276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29397
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
