Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001566A_C01 KMC001566A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88535.1| unnamed protein product [Oryza sativa (japonica ... 117 8e-26
gb|AAM64349.1| 26S proteasome non-ATPase regulatory subunit [Ara... 114 7e-25
ref|NP_197745.1| 26S proteasome regulatory subunit (RPN11), puta... 114 7e-25
ref|XP_215745.1| similar to 26S proteasome-associated pad1 homol... 90 1e-17
gb|AAH45094.1| Similar to 26S proteasome-associated pad1 homolog... 90 1e-17
>dbj|BAA88535.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|17297983|dbj|BAB78489.1| 26S proteasome regulatory
particle non-ATPase subunit11 [Oryza sativa (japonica
cultivar-group)]
Length = 307
Score = 117 bits (292), Expect = 8e-26
Identities = 59/62 (95%), Positives = 60/62 (96%)
Frame = -1
Query: 471 MLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTV 292
ML+LA KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLG MLDTV
Sbjct: 246 MLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 305
Query: 291 VF 286
VF
Sbjct: 306 VF 307
>gb|AAM64349.1| 26S proteasome non-ATPase regulatory subunit [Arabidopsis thaliana]
Length = 308
Score = 114 bits (284), Expect = 7e-25
Identities = 58/62 (93%), Positives = 58/62 (93%)
Frame = -1
Query: 471 MLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTV 292
MLSLA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLG MLDTV
Sbjct: 247 MLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 306
Query: 291 VF 286
VF
Sbjct: 307 VF 308
>ref|NP_197745.1| 26S proteasome regulatory subunit (RPN11), putative; protein id:
At5g23540.1, supported by cDNA: 23276., supported by
cDNA: gi_17979144, supported by cDNA: gi_20259104
[Arabidopsis thaliana] gi|8809705|dbj|BAA97246.1| 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana] gi|17979145|gb|AAL49768.1| putative 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana] gi|20259105|gb|AAM14268.1| putative 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana]
Length = 308
Score = 114 bits (284), Expect = 7e-25
Identities = 58/62 (93%), Positives = 58/62 (93%)
Frame = -1
Query: 471 MLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTV 292
MLSLA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLG MLDTV
Sbjct: 247 MLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 306
Query: 291 VF 286
VF
Sbjct: 307 VF 308
>ref|XP_215745.1| similar to 26S proteasome-associated pad1 homolog; 26S proteasome
non-ATPase subunit [Mus musculus] [Rattus norvegicus]
Length = 270
Score = 89.7 bits (221), Expect = 1e-17
Identities = 44/62 (70%), Positives = 51/62 (81%)
Frame = -1
Query: 471 MLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTV 292
ML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV LM+SNIVQ L MLDTV
Sbjct: 208 MLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTV 267
Query: 291 VF 286
VF
Sbjct: 268 VF 269
>gb|AAH45094.1| Similar to 26S proteasome-associated pad1 homolog [Xenopus laevis]
Length = 310
Score = 89.7 bits (221), Expect = 1e-17
Identities = 44/62 (70%), Positives = 51/62 (81%)
Frame = -1
Query: 471 MLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTV 292
ML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV LM+SNIVQ L MLDTV
Sbjct: 248 MLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTV 307
Query: 291 VF 286
VF
Sbjct: 308 VF 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,757,377
Number of Sequences: 1393205
Number of extensions: 7540248
Number of successful extensions: 19538
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 18551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19520
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
