Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001565A_C01 KMC001565A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190012.1| CCR4-associated factor 1-like protein; protein ... 257 7e-68
ref|NP_197617.1| CCR4-associated factor-like protein; protein id... 251 4e-66
ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associat... 180 1e-44
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 177 1e-43
pir||F84728 probable CCR4-associated factor [imported] - Arabido... 176 3e-43
>ref|NP_190012.1| CCR4-associated factor 1-like protein; protein id: At3g44260.1
[Arabidopsis thaliana] gi|11288396|pir||T49142
CCR4-associated factor 1-like protein - Arabidopsis
thaliana gi|7649377|emb|CAB88994.1| CCR4-associated
factor 1-like protein [Arabidopsis thaliana]
gi|15292829|gb|AAK92783.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
gi|21436313|gb|AAM51295.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
Length = 280
Score = 257 bits (657), Expect = 7e-68
Identities = 121/164 (73%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
Frame = -1
Query: 609 IERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDF 430
+ RDAHA DSI+LLRRQGIDF RN DGV+S FAEL+MSSGLVCN+ VSWVTFHSAYDF
Sbjct: 116 VARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDF 175
Query: 429 GYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCE-ALYGGLDRVAQTLNVDR 253
GYL+K+LTRR LP L EF +++RV FG+ VYDVK+MM+FCE L+GGLDRVA+TL V+R
Sbjct: 176 GYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNR 235
Query: 252 AVGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEV 121
AVGKCHQAGSDSLLTWHA+Q+MR++YF+ D P+KHAGVL+GLEV
Sbjct: 236 AVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>ref|NP_197617.1| CCR4-associated factor-like protein; protein id: At5g22250.1,
supported by cDNA: gi_17381057 [Arabidopsis thaliana]
gi|9757805|dbj|BAB08323.1| CCR4-associated factor-like
protein [Arabidopsis thaliana]
gi|17381058|gb|AAL36341.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|25054979|gb|AAN71961.1|
putative CCR4-associated factor [Arabidopsis thaliana]
Length = 278
Score = 251 bits (642), Expect = 4e-66
Identities = 121/164 (73%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
Frame = -1
Query: 609 IERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDF 430
+ERD HA DSI+LLRR GIDF RN +GV+S FAEL+MSSGL+CN+SVSWVTFHSAYDF
Sbjct: 114 VERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDF 173
Query: 429 GYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCE-ALYGGLDRVAQTLNVDR 253
GYLVK+LTRR LP L EFL LLR FFG VYDVK++MRFCE LYGGLDRVA++L V+R
Sbjct: 174 GYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNR 233
Query: 252 AVGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEV 121
AVGKCHQAGSDSLLTW A+Q+MR++YF+ D +KHAGVL+GLEV
Sbjct: 234 AVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associated factor, putative;
protein id: At1g80780.1, supported by cDNA: gi_17979380,
supported by cDNA: gi_20465784 [Arabidopsis thaliana]
gi|25363292|pir||D96840 hypothetical protein F23A5.13
[imported] - Arabidopsis thaliana
gi|6503290|gb|AAF14666.1|AC011713_14 Similar to
gb|U21855 CCR4-associated factor 1 (CAF1) from Mus
musculus. ESTs gb|AAA394972, gb|AA585812 and gb|H77015
come from this gene. [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|20465785|gb|AAM20381.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 274
Score = 180 bits (457), Expect = 1e-44
Identities = 88/163 (53%), Positives = 126/163 (76%)
Frame = -1
Query: 609 IERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDF 430
++ D ALDSI+LL++ GID +N DG+DS FAEL+MSSG+V N++V WVTFHS YDF
Sbjct: 108 LDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDF 167
Query: 429 GYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCEALYGGLDRVAQTLNVDRA 250
GYL+K+LT +NLP+ +F KL+ V+F VYD+K++M+FC +L+GGL+++A+ L V+R
Sbjct: 168 GYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER- 225
Query: 249 VGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEV 121
VG CHQAGSDSLLT ++K++E +F+ K++GVL+GL V
Sbjct: 226 VGICHQAGSDSLLTSCTFRKLKENFFVG-PLHKYSGVLYGLGV 267
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 177 bits (449), Expect = 1e-43
Identities = 89/163 (54%), Positives = 122/163 (74%)
Frame = -1
Query: 609 IERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDF 430
I D +A +SI+LLR+ GIDF++N+ G+D V F EL+MSSG+V ND++SWVTFH YDF
Sbjct: 108 IGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDF 167
Query: 429 GYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCEALYGGLDRVAQTLNVDRA 250
GYLVK+LT + LP +F KLL V+F VYD+K++M FC L+GGL+R+A+ + V+R
Sbjct: 168 GYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER- 225
Query: 249 VGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEV 121
VG CHQAGSDSLLT +++K++E YF +K+ GVL+GL V
Sbjct: 226 VGICHQAGSDSLLTLGSFRKLKERYF-PGSTEKYTGVLYGLGV 267
>pir||F84728 probable CCR4-associated factor [imported] - Arabidopsis thaliana
Length = 252
Score = 176 bits (445), Expect = 3e-43
Identities = 88/163 (53%), Positives = 127/163 (76%)
Frame = -1
Query: 609 IERDAHALDSIDLLRRQGIDFRRNVTDGVDSVDFAELVMSSGLVCNDSVSWVTFHSAYDF 430
+E D +A DSI+LLR+ GIDF +N G+DS FAEL+MSSG+V N++V WVTFHS YDF
Sbjct: 86 LESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDF 145
Query: 429 GYLVKVLTRRNLPNGLEEFLKLLRVFFGKNVYDVKYMMRFCEALYGGLDRVAQTLNVDRA 250
GYL+K+LT +NLP F +++ V+F + VYD+K++M+FC +L+GGL+++A+ L+V+R
Sbjct: 146 GYLLKLLTCQNLPETQTGFFEMISVYFPR-VYDIKHLMKFCNSLHGGLNKLAELLDVER- 203
Query: 249 VGKCHQAGSDSLLTWHAYQKMREIYFINDEPQKHAGVLFGLEV 121
VG CHQAGSDSLLT ++K++E +FI +K++GVL+GL V
Sbjct: 204 VGICHQAGSDSLLTSCTFRKLQENFFIG-SMEKYSGVLYGLGV 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,866,479
Number of Sequences: 1393205
Number of extensions: 14028778
Number of successful extensions: 69610
Number of sequences better than 10.0: 772
Number of HSP's better than 10.0 without gapping: 52218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66577
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
