Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001564A_C01 KMC001564A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198884.1| putative protein; protein id: At5g40680.1 [Arab... 74 2e-12
ref|NP_189351.1| unknown protein; protein id: At3g27150.1 [Arabi... 55 1e-06
emb|CAB55405.1| zwh21.1 [Oryza sativa (indica cultivar-group)] 32 9.1
emb|CAB51837.1| l1332.8 [Oryza sativa (indica cultivar-group)] 32 9.1
>ref|NP_198884.1| putative protein; protein id: At5g40680.1 [Arabidopsis thaliana]
gi|9758096|dbj|BAB08540.1| contains similarity to
unknown protein~emb|CAB55405.1~gene_id:MNF13.24
[Arabidopsis thaliana]
Length = 415
Score = 73.9 bits (180), Expect = 2e-12
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -1
Query: 717 WGVAFKSLVDELLVIGAPSVSHTERALAMYTCCPDPTAEKLRWRQIECGSIQLNHFIRTL 538
WGVAFKS+ D +LVIGA + +++YTCCP P EK+ W + C +QL HFIR
Sbjct: 351 WGVAFKSVGDRILVIGASVTKSWDNKMSVYTCCPFPKVEKITWEETSCDCVQLGHFIRNC 410
Query: 537 C 535
C
Sbjct: 411 C 411
>ref|NP_189351.1| unknown protein; protein id: At3g27150.1 [Arabidopsis thaliana]
gi|9294080|dbj|BAB01932.1| contains similarity to
unknown protein~emb|CAB55405.1~gene_id:MYF5.2
[Arabidopsis thaliana]
Length = 422
Score = 54.7 bits (130), Expect = 1e-06
Identities = 29/65 (44%), Positives = 38/65 (57%), Gaps = 2/65 (3%)
Frame = -1
Query: 723 GAWGVAFKSLVDELLVIGAPSVSHTERALAMYTCCPDPT-AEKLRWRQIE-CGSIQLNHF 550
G WGVAFKSL D+LLVIGA + +++YT P A KL W + + C ++ NHF
Sbjct: 354 GGWGVAFKSLGDKLLVIGASAGPSRAETMSVYTSRPSANPANKLYWEESKRCCGVRFNHF 413
Query: 549 IRTLC 535
I C
Sbjct: 414 ILNCC 418
>emb|CAB55405.1| zwh21.1 [Oryza sativa (indica cultivar-group)]
Length = 564
Score = 32.0 bits (71), Expect = 9.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 717 WGVAFKSLVDELLVIGAPSVSHTERALAMYTCCPD 613
WG+AFK+ D LLVIG V E + +++ CP+
Sbjct: 502 WGLAFKACGDRLLVIGGHRVPRGE-VILLHSWCPE 535
>emb|CAB51837.1| l1332.8 [Oryza sativa (indica cultivar-group)]
Length = 455
Score = 32.0 bits (71), Expect = 9.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 717 WGVAFKSLVDELLVIGAPSVSHTERALAMYTCCPD 613
WG+AFK+ D LLVIG V E + +++ CP+
Sbjct: 393 WGLAFKACGDRLLVIGGHRVPRGE-VILLHSWCPE 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,033,117
Number of Sequences: 1393205
Number of extensions: 10963522
Number of successful extensions: 21005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20979
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
