Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001563A_C01 KMC001563A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64152.1| putative muconate cycloisomerase-like protein [O... 136 2e-31
ref|NP_566605.1| expressed protein; protein id: At3g18270.1, sup... 127 1e-28
dbj|BAB01176.1| muconate cycloisomerase-like protein [Arabidopsi... 127 1e-28
gb|ZP_00018542.1| hypothetical protein [Chloroflexus aurantiacus] 75 7e-13
ref|NP_602402.1| O-succinylbenzoate-CoA synthase [Fusobacterium ... 47 2e-04
>dbj|BAB64152.1| putative muconate cycloisomerase-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 530
Score = 136 bits (343), Expect = 2e-31
Identities = 63/81 (77%), Positives = 71/81 (86%)
Frame = -1
Query: 689 DIIDKAKVAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLADDPVLEGYEV 510
++ID A+ A + LMIGGMVETR+AMGFAGHLAAGLGCF F+DLDTPLLL++DPV GYEV
Sbjct: 446 EVIDAARKARIALMIGGMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVFGGYEV 505
Query: 509 SGATYKFTNARGHGGFLHWDN 447
SG YKFTNARGHGGFLH DN
Sbjct: 506 SGPVYKFTNARGHGGFLHLDN 526
>ref|NP_566605.1| expressed protein; protein id: At3g18270.1, supported by cDNA:
gi_13878120, supported by cDNA: gi_17104792 [Arabidopsis
thaliana] gi|13878121|gb|AAK44138.1|AF370323_1 unknown
protein [Arabidopsis thaliana]
gi|17104793|gb|AAL34285.1| unknown protein [Arabidopsis
thaliana]
Length = 410
Score = 127 bits (319), Expect = 1e-28
Identities = 57/83 (68%), Positives = 72/83 (86%)
Frame = -1
Query: 689 DIIDKAKVAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLADDPVLEGYEV 510
++I+ A+ +G++LMIGGMVETRLAMGF+GHLAAGLGCF+FIDLDTPLLLADDPV GY+
Sbjct: 327 EVIELARSSGIELMIGGMVETRLAMGFSGHLAAGLGCFRFIDLDTPLLLADDPVQGGYKA 386
Query: 509 SGATYKFTNARGHGGFLHWDNVA 441
GA Y+F + GHGG+L W++VA
Sbjct: 387 CGAVYEFKDEGGHGGYLQWNDVA 409
>dbj|BAB01176.1| muconate cycloisomerase-like protein [Arabidopsis thaliana]
Length = 415
Score = 127 bits (319), Expect = 1e-28
Identities = 57/83 (68%), Positives = 72/83 (86%)
Frame = -1
Query: 689 DIIDKAKVAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLADDPVLEGYEV 510
++I+ A+ +G++LMIGGMVETRLAMGF+GHLAAGLGCF+FIDLDTPLLLADDPV GY+
Sbjct: 332 EVIELARSSGIELMIGGMVETRLAMGFSGHLAAGLGCFRFIDLDTPLLLADDPVQGGYKA 391
Query: 509 SGATYKFTNARGHGGFLHWDNVA 441
GA Y+F + GHGG+L W++VA
Sbjct: 392 CGAVYEFKDEGGHGGYLQWNDVA 414
>gb|ZP_00018542.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 362
Score = 75.5 bits (184), Expect = 7e-13
Identities = 39/70 (55%), Positives = 48/70 (67%), Gaps = 1/70 (1%)
Frame = -1
Query: 674 AKVAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLADDPVLEGYEVSGATY 495
A+ AGL LMIGGMVE+ LAM + H AAGLG F+F+DLDTPL LA +P G+E+ G
Sbjct: 284 ARAAGLGLMIGGMVESILAMTVSAHFAAGLGGFRFVDLDTPLFLATNPFQGGFELRGGVI 343
Query: 494 KFTN-ARGHG 468
+ A GHG
Sbjct: 344 DLCHIATGHG 353
>ref|NP_602402.1| O-succinylbenzoate-CoA synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19712800|gb|AAL93701.1|
O-succinylbenzoate-CoA synthase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 375
Score = 47.4 bits (111), Expect = 2e-04
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -1
Query: 686 IIDKAKVAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLADDPVLEG 519
II A++ G++ MIG M+E ++++ A HLA IDLD P+L ++DP++ G
Sbjct: 292 IISMAEIVGVECMIGCMLEAKVSVNAAVHLACAKQIITKIDLDGPVLCSEDPIIGG 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,476,651
Number of Sequences: 1393205
Number of extensions: 12769711
Number of successful extensions: 29604
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 28767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29582
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
