Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001562A_C01 KMC001562A_c01
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22150.1| succinyl CoA ligase beta subunit [Lycopersicon es... 253 2e-66
ref|NP_179632.1| succinyl-CoA ligase beta subunit; protein id: A... 248 9e-65
gb|AAM65138.1| succinyl-CoA ligase beta subunit [Arabidopsis tha... 245 5e-64
gb|AAO52473.1| similar to Sus scrofa (Pig). Succinyl-CoA ligase ... 206 4e-52
gb|AAC69705.1| ATP-specific succinyl-CoA synthetase beta subunit... 197 1e-49
>gb|AAO22150.1| succinyl CoA ligase beta subunit [Lycopersicon esculentum]
Length = 417
Score = 253 bits (646), Expect = 2e-66
Identities = 130/137 (94%), Positives = 133/137 (96%)
Frame = -2
Query: 777 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 598
AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA+EGQVVEAFKI
Sbjct: 276 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNATEGQVVEAFKI 335
Query: 597 LTADSKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKRILKES 418
LTAD KVKAILVNIFGGIMKCDVIASGIVNAAKQV LKVPVIVRLEGTNV+QGKRILKES
Sbjct: 336 LTADEKVKAILVNIFGGIMKCDVIASGIVNAAKQVQLKVPVIVRLEGTNVEQGKRILKES 395
Query: 417 GMTLITAEDLDDAAHQA 367
GM LITAEDLDDAA +A
Sbjct: 396 GMKLITAEDLDDAAEKA 412
>ref|NP_179632.1| succinyl-CoA ligase beta subunit; protein id: At2g20420.1,
supported by cDNA: 36904., supported by cDNA:
gi_20466481 [Arabidopsis thaliana]
gi|21264030|sp|O82662|SUCB_ARATH Succinyl-CoA ligase
[GDP-forming] beta-chain, mitochondrial precursor
(Succinyl-CoA synthetase, beta chain) (SCS-beta)
gi|11272036|pir||T51809 succinate-CoA ligase
(ADP-forming) (EC 6.2.1.5) beta chain [imported] -
Arabidopsis thaliana gi|3660469|emb|CAA05024.1|
succinyl-CoA-ligase beta subunit [Arabidopsis thaliana]
gi|20197853|gb|AAM15283.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
gi|20466482|gb|AAM20558.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
gi|22136422|gb|AAM91289.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
Length = 421
Score = 248 bits (632), Expect = 9e-65
Identities = 126/137 (91%), Positives = 132/137 (95%)
Frame = -2
Query: 777 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 598
AAK DLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKI
Sbjct: 279 AAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKI 338
Query: 597 LTADSKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKRILKES 418
LT+D KVKAILVNIFGGIMKCDVIASGIVNAAK+VALKVPV+VRLEGTNV+QGKRILKES
Sbjct: 339 LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILKES 398
Query: 417 GMTLITAEDLDDAAHQA 367
GM LITA+DLDDAA +A
Sbjct: 399 GMKLITADDLDDAAEKA 415
>gb|AAM65138.1| succinyl-CoA ligase beta subunit [Arabidopsis thaliana]
Length = 421
Score = 245 bits (626), Expect = 5e-64
Identities = 125/137 (91%), Positives = 131/137 (95%)
Frame = -2
Query: 777 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 598
AAK DLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKI
Sbjct: 279 AAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKI 338
Query: 597 LTADSKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKRILKES 418
LT+D KVKAILVNIFGGIMKCDVIASGIVNAAK+VALKVPV+V LEGTNV+QGKRILKES
Sbjct: 339 LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVSLEGTNVEQGKRILKES 398
Query: 417 GMTLITAEDLDDAAHQA 367
GM LITA+DLDDAA +A
Sbjct: 399 GMKLITADDLDDAAEKA 415
>gb|AAO52473.1| similar to Sus scrofa (Pig). Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS-beta)
[Dictyostelium discoideum]
Length = 420
Score = 206 bits (523), Expect = 4e-52
Identities = 103/137 (75%), Positives = 118/137 (85%)
Frame = -2
Query: 777 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 598
A K LNYIGLDG IGCMVNGAGLAMATMDIIKL GG PANFLDVGG+ASE V EAFKI
Sbjct: 278 AGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKI 337
Query: 597 LTADSKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKRILKES 418
LT D +VK +LVNIFGGIMKCD+IASGIVNA+KQV LK+P++VRLEGTNV+ GK IL++S
Sbjct: 338 LTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEILEKS 397
Query: 417 GMTLITAEDLDDAAHQA 367
G+ + +A DLDDAA +A
Sbjct: 398 GLNITSASDLDDAAIKA 414
>gb|AAC69705.1| ATP-specific succinyl-CoA synthetase beta subunit [Columba livia]
Length = 413
Score = 197 bits (502), Expect = 1e-49
Identities = 96/134 (71%), Positives = 113/134 (83%)
Frame = -2
Query: 777 AAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 598
AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+ QV EAFK+
Sbjct: 254 AAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKL 313
Query: 597 LTADSKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKRILKES 418
+T+D KV AILVNIFGGIM+CDVIA GIV A K + LK+PV+VRL+GT VD K ++ S
Sbjct: 314 ITSDKKVLAILVNIFGGIMRCDVIAQGIVVAVKDLDLKIPVVVRLQGTRVDDAKALITAS 373
Query: 417 GMTLITAEDLDDAA 376
G+ ++ +DLD+AA
Sbjct: 374 GLKILACDDLDEAA 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,337,335
Number of Sequences: 1393205
Number of extensions: 16286546
Number of successful extensions: 40456
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 38635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40382
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
