Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001561A_C01 KMC001561A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC15510.1| contains EST C27990(C53630)~similar to G-protein... 176 1e-43
ref|NP_197059.1| G-protein beta family; protein id: At5g15550.1,... 174 6e-43
gb|AAH44198.1| Unknown (protein for MGC:55609) [Danio rerio] 78 8e-14
ref|XP_217414.1| similar to WD repeat domain 12; nuclear protein... 72 3e-12
gb|AAL29680.1| WD repeat domain 12 [Mus musculus] 72 3e-12
>dbj|BAC15510.1| contains EST C27990(C53630)~similar to G-protein beta family [Oryza
sativa (japonica cultivar-group)]
Length = 436
Score = 176 bits (447), Expect = 1e-43
Identities = 73/93 (78%), Positives = 85/93 (90%)
Frame = -2
Query: 543 WDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTAWPLSVIES 364
WDPRKPGT P+FQF+SH SW+S+CKWH +SWFHL+S+S+DGKVMLWDLRTAWPL+ +ES
Sbjct: 343 WDPRKPGTLAPIFQFSSHKSWISACKWHPSSWFHLVSSSFDGKVMLWDLRTAWPLASVES 402
Query: 363 HSDKVLCADWWKGDSVISGGADSKLCISSEIPV 265
H DKVLCADWWKGDSVISGGADSKLCI+S I +
Sbjct: 403 HKDKVLCADWWKGDSVISGGADSKLCIASGIEI 435
>ref|NP_197059.1| G-protein beta family; protein id: At5g15550.1, supported by cDNA:
gi_17381109, supported by cDNA: gi_20258960 [Arabidopsis
thaliana] gi|11358124|pir||T51533 hypothetical protein
T20K14_160 - Arabidopsis thaliana
gi|9755810|emb|CAC01754.1| putative protein [Arabidopsis
thaliana] gi|17381110|gb|AAL36367.1| unknown protein
[Arabidopsis thaliana] gi|20258961|gb|AAM14196.1|
unknown protein [Arabidopsis thaliana]
Length = 433
Score = 174 bits (441), Expect = 6e-43
Identities = 74/93 (79%), Positives = 86/93 (91%)
Frame = -2
Query: 543 WDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTAWPLSVIES 364
WDPRKPGTS PVFQF+SH+SW+S+CKWH +SWFHLLSASYDGK+MLWDLRTAWPLSVI++
Sbjct: 340 WDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDT 399
Query: 363 HSDKVLCADWWKGDSVISGGADSKLCISSEIPV 265
H+DKVL ADWWKG+SV+SGGADS L ISS I +
Sbjct: 400 HNDKVLSADWWKGESVVSGGADSNLRISSGIAI 432
>gb|AAH44198.1| Unknown (protein for MGC:55609) [Danio rerio]
Length = 422
Score = 77.8 bits (190), Expect = 8e-14
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -2
Query: 543 WDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTA-WPLSVIE 367
WDPR S + SH WV++ +W + L+S S D V LWD R+ PL +
Sbjct: 323 WDPRSKDGSLVLLSLTSHNGWVTAVRWAPSHEHQLVSGSLDNVVKLWDTRSCKAPLYDLA 382
Query: 366 SHSDKVLCADWWKGDSVISGGADSKL 289
+H DKVLCADW + ++SGGAD+KL
Sbjct: 383 AHEDKVLCADWTENGLILSGGADNKL 408
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = -2
Query: 522 TSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTAWPLSVI 370
T P+ + H VSS W D L SAS+D + LWD T S +
Sbjct: 245 TRTPLMTLSGHNEAVSSVLWMDAD--ELCSASWDHTIRLWDAETGGQKSTL 293
>ref|XP_217414.1| similar to WD repeat domain 12; nuclear protein Ytm1 [Mus musculus]
[Rattus norvegicus]
Length = 212
Score = 72.4 bits (176), Expect = 3e-12
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -2
Query: 543 WDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTA-WPLSVIE 367
WDPR S SHT WV+S KW L+S S D V LWD R+ PL +
Sbjct: 113 WDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHDQQLISGSLDNMVKLWDTRSCKAPLYDLA 172
Query: 366 SHSDKVLCADWWKGDSVISGGADSKL 289
+H DKVL DW ++SGGAD+KL
Sbjct: 173 AHEDKVLSVDWTDTGLLLSGGADNKL 198
>gb|AAL29680.1| WD repeat domain 12 [Mus musculus]
Length = 423
Score = 72.4 bits (176), Expect = 3e-12
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = -2
Query: 543 WDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTA-WPLSVIE 367
WDPR S SHT WV+S KW L+S S D V LWD R+ PL +
Sbjct: 324 WDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLA 383
Query: 366 SHSDKVLCADWWKGDSVISGGADSKLCISSEIP 268
+H DKVL DW ++SGGAD+KL S P
Sbjct: 384 AHEDKVLSVDWTDTGLLLSGGADNKLYSYSYSP 416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,864,941
Number of Sequences: 1393205
Number of extensions: 10510626
Number of successful extensions: 28245
Number of sequences better than 10.0: 854
Number of HSP's better than 10.0 without gapping: 25156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28139
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
