Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001560A_C01 KMC001560A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175278.1| unknown protein; protein id: At1g48450.1, suppo... 168 8e-41
gb|AAK30572.1|AF346660_1 unknown [Brassica napus] 166 4e-40
ref|NP_566588.1| expressed protein; protein id: At3g17800.1, sup... 164 1e-39
gb|AAL32564.1| Unknown protein [Arabidopsis thaliana] gi|2025985... 164 1e-39
gb|AAO38836.1| unknown protein [Oryza sativa (japonica cultivar-... 153 2e-36
>ref|NP_175278.1| unknown protein; protein id: At1g48450.1, supported by cDNA:
gi_17380819, supported by cDNA: gi_18086464 [Arabidopsis
thaliana] gi|8778707|gb|AAF79715.1|AC020889_23 T1N15.6
[Arabidopsis thaliana] gi|18086465|gb|AAL57686.1|
At1g48450/T1N15_5 [Arabidopsis thaliana]
gi|24030356|gb|AAN41342.1| unknown protein [Arabidopsis
thaliana]
Length = 423
Score = 168 bits (425), Expect = 8e-41
Identities = 84/96 (87%), Positives = 90/96 (93%)
Frame = -1
Query: 714 SRLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIK 535
SRL TY+MSFDGETLQRYATIRS+ESV IIEKHTEALFGRP+ VITP+G I+SSKDE IK
Sbjct: 328 SRLKTYVMSFDGETLQRYATIRSRESVGIIEKHTEALFGRPEIVITPQGTIDSSKDEHIK 387
Query: 534 ISFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN 427
ISF GLKRLVLEAVTFGSFLWDVES+VDSRYHFVLN
Sbjct: 388 ISFKGLKRLVLEAVTFGSFLWDVESHVDSRYHFVLN 423
>gb|AAK30572.1|AF346660_1 unknown [Brassica napus]
Length = 256
Score = 166 bits (419), Expect = 4e-40
Identities = 80/96 (83%), Positives = 90/96 (93%)
Frame = -1
Query: 714 SRLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIK 535
SRL TY+MSFD ETLQRYATIRS+E+V IIEKHTEALFG+P+ VITPEG ++SSKDE IK
Sbjct: 161 SRLRTYVMSFDSETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIK 220
Query: 534 ISFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN 427
ISFGG+KRLVLEAVTFGSFLWDVES+VD+RYHFVLN
Sbjct: 221 ISFGGMKRLVLEAVTFGSFLWDVESHVDARYHFVLN 256
>ref|NP_566588.1| expressed protein; protein id: At3g17800.1, supported by cDNA:
15577., supported by cDNA: gi_17064819, supported by
cDNA: gi_20259855, supported by cDNA: gi_20466176
[Arabidopsis thaliana] gi|9294484|dbj|BAB02703.1|
gb|AAF02142.1~gene_id:MEB5.2~similar to unknown protein
[Arabidopsis thaliana] gi|20466177|gb|AAM20406.1|
unknown protein [Arabidopsis thaliana]
Length = 421
Score = 164 bits (415), Expect = 1e-39
Identities = 79/96 (82%), Positives = 90/96 (93%)
Frame = -1
Query: 714 SRLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIK 535
SRL +Y+MSFD ETLQRYATIRS+E+V IIEKHTEALFG+P+ VITPEG ++SSKDE IK
Sbjct: 326 SRLRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIK 385
Query: 534 ISFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN 427
ISFGG+KRLVLEAVTFGSFLWDVES+VD+RYHFVLN
Sbjct: 386 ISFGGMKRLVLEAVTFGSFLWDVESHVDARYHFVLN 421
>gb|AAL32564.1| Unknown protein [Arabidopsis thaliana] gi|20259856|gb|AAM13275.1|
unknown protein [Arabidopsis thaliana]
Length = 421
Score = 164 bits (415), Expect = 1e-39
Identities = 79/96 (82%), Positives = 90/96 (93%)
Frame = -1
Query: 714 SRLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIK 535
SRL +Y+MSFD ETLQRYATIRS+E+V IIEKHTEALFG+P+ VITPEG ++SSKDE IK
Sbjct: 326 SRLRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIK 385
Query: 534 ISFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN 427
ISFGG+KRLVLEAVTFGSFLWDVES+VD+RYHFVLN
Sbjct: 386 ISFGGMKRLVLEAVTFGSFLWDVESHVDARYHFVLN 421
>gb|AAO38836.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 413
Score = 153 bits (387), Expect = 2e-36
Identities = 72/95 (75%), Positives = 85/95 (88%)
Frame = -1
Query: 711 RLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIKI 532
RL +Y+MSFD ETLQ YATIRSKE+ IIEKHTEALFG+P+ VITPEG ++SSKDE ++I
Sbjct: 319 RLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRI 378
Query: 531 SFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN 427
SF GL+RL+LEAVTFGSFLWDVES+VD+RYHFV N
Sbjct: 379 SFAGLRRLILEAVTFGSFLWDVESFVDTRYHFVAN 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,560,403
Number of Sequences: 1393205
Number of extensions: 12210663
Number of successful extensions: 26436
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26431
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
