Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001552A_C01 KMC001552A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S78456 pectinesterase (EC 3.1.1.11) precursor - mung bean ... 206 2e-52
pir||S72525 pectinesterase (EC 3.1.1.11) gamma - mung bean (frag... 199 2e-50
pir||T06374 probable pectinesterase (EC 3.1.1.11) precursor - ga... 199 2e-50
pir||T06468 pectinesterase (EC 3.1.1.11) precursor - garden pea ... 199 2e-50
emb|CAD29733.1| pectin methylesterase [Sesbania rostrata] 195 4e-49
>pir||S78456 pectinesterase (EC 3.1.1.11) precursor - mung bean (fragment)
gi|1149556|emb|CAA64217.1| pectinmethylesterase [Vigna
radiata]
Length = 320
Score = 206 bits (523), Expect = 2e-52
Identities = 93/105 (88%), Positives = 100/105 (94%)
Frame = -3
Query: 581 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 402
GSIKTYLGRPWKKYSRT+++QSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEY+NSGAGAG
Sbjct: 216 GSIKTYLGRPWKKYSRTVIMQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAG 275
Query: 401 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 267
T KRVNWPG+H+I +AAEASKFTV QLIQGNVWLK GVNFIEGL
Sbjct: 276 TSKRVNWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNFIEGL 320
>pir||S72525 pectinesterase (EC 3.1.1.11) gamma - mung bean (fragment)
Length = 314
Score = 199 bits (506), Expect = 2e-50
Identities = 92/105 (87%), Positives = 99/105 (93%)
Frame = -3
Query: 581 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 402
GSIKTYLGRPWKKYSRT+++QSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEY+NSGAGAG
Sbjct: 211 GSIKTYLGRPWKKYSRTVIMQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAG 270
Query: 401 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 267
T KRVNWPG+H+I +AAEASKF V QLIQGNVWLK GVNFIEGL
Sbjct: 271 TSKRVNWPGYHIITSAAEASKF-VTQLIQGNVWLKNTGVNFIEGL 314
>pir||T06374 probable pectinesterase (EC 3.1.1.11) precursor - garden pea
gi|3088646|gb|AAC14742.1| pectin methylesterase [Pisum
sativum] gi|3426335|gb|AAC32273.1| pectin methylesterase
[Pisum sativum]
Length = 554
Score = 199 bits (506), Expect = 2e-50
Identities = 92/105 (87%), Positives = 96/105 (90%)
Frame = -3
Query: 581 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 402
GSIKTYLGRPWKKYSRT+VLQS +DSHIDP GWAEWDA SKDFLQTLYYGEYLNSGAGAG
Sbjct: 450 GSIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAG 509
Query: 401 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 267
T KRV WPG+H+IKTAAEASKFTV QLIQGNVWLK GV FIEGL
Sbjct: 510 TSKRVTWPGYHIIKTAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
>pir||T06468 pectinesterase (EC 3.1.1.11) precursor - garden pea
gi|2578440|emb|CAA47810.1| pectinesterase [Pisum
sativum]
Length = 554
Score = 199 bits (506), Expect = 2e-50
Identities = 92/105 (87%), Positives = 96/105 (90%)
Frame = -3
Query: 581 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 402
GSIKTYLGRPWKKYSRT+VLQS +DSHIDP GWAEWDA SKDFLQTLYYGEYLNSGAGAG
Sbjct: 450 GSIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAG 509
Query: 401 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 267
T KRV WPG+H+IKTAAEASKFTV QLIQGNVWLK GV FIEGL
Sbjct: 510 TSKRVTWPGYHIIKTAAEASKFTVTQLIQGNVWLKNTGVAFIEGL 554
>emb|CAD29733.1| pectin methylesterase [Sesbania rostrata]
Length = 554
Score = 195 bits (495), Expect = 4e-49
Identities = 88/105 (83%), Positives = 97/105 (91%)
Frame = -3
Query: 581 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 402
GSIKT+LGRPWKK+SRT+VLQS +D+HIDPTGWAEWDAQSKDFL TLYYGEY+N+G GAG
Sbjct: 450 GSIKTFLGRPWKKFSRTVVLQSFVDNHIDPTGWAEWDAQSKDFLNTLYYGEYMNNGPGAG 509
Query: 401 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 267
T KRVNWPG+HVI +AAEASKFTV QLIQGNVWLK GVNFIEGL
Sbjct: 510 TSKRVNWPGYHVITSAAEASKFTVRQLIQGNVWLKNTGVNFIEGL 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,620,210
Number of Sequences: 1393205
Number of extensions: 10606481
Number of successful extensions: 27744
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 26701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27546
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
