KMC001548A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001548A_C01 KMC001548A_c01
ggaaagatcaaataaacagtacatttcaccaactggtagcagttacaGGACTTAAAAGCT
ATTATACAATATATATCAGTGTCCCCTTCTCCCAAGAAGGTTTGCTATTTGTGTTGAATT
GCTGAACCTGAAAAAACAACAACATATTCCCAGAGACAACGCAAATATCACATATAATAC
AGCCCAACACGTTGGACAATCCATAAAATGTCACGTTACAAAATCTACAAACCTTAAGGG
AGAACTTTTAAAACGTAAGACATTAGCTTGGTCATTCAACATAGAAAAGACTTGACTTTC
TCTGTCCTCTAGAATTTATACTTGGAGTGCAAAAACATCCAAGAAAACAGAGAACAACTA
ATGATGCCTTCTGACTAAGTTTTCTCCACATGTTAATATTCTTTCAGCGAATCGGGTGAT
ATTGTGTGATACCCCGCTTGGGGGGTAACTTCCTCAAAATGAAAAGGACCAAAGAAGAAG
GCAATATTTCCACCAACAGGTAATATATGAAGTTTAGAATGGGATGGTCCAAGACATCGA
GGTCAGCAGCTTTATCAAATGCATCGAAGCACATCATAACACATCTGATAAGGAAGCATG
AAAAACATATGGTGGTCACATAGCCAACCTCTTGCAGCTTCTTACGTCGACCTTnGGACT
CGACAGGAAAGCGTTGAAGCATCAAGAATAATCTCCCACCATAGAGAAGAAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001548A_C01 KMC001548A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana gi... 199 2e-50
gb|AAF43955.1|AC012188_32 Contains similarity to an unknown prot... 199 2e-50
gb|AAM61457.1| unknown [Arabidopsis thaliana] 199 2e-50
ref|NP_563953.1| expressed protein; protein id: At1g14530.1, sup... 199 2e-50
gb|AAO22624.1| unknown protein [Arabidopsis thaliana] 199 2e-50
>pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana
gi|7527730|gb|AAF63179.1|AC010657_15 T5E21.3
[Arabidopsis thaliana]
Length = 328
Score = 199 bits (507), Expect = 2e-50
Identities = 96/102 (94%), Positives = 99/102 (96%)
Frame = -1
Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 227 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 286
Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 287 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 328
>gb|AAF43955.1|AC012188_32 Contains similarity to an unknown protein from Arabidopsis thaliana
gb|AC005936.2. EST gb|AI997527 comes from this gene
Length = 343
Score = 199 bits (507), Expect = 2e-50
Identities = 96/102 (94%), Positives = 99/102 (96%)
Frame = -1
Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 242 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 301
Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 302 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 343
>gb|AAM61457.1| unknown [Arabidopsis thaliana]
Length = 285
Score = 199 bits (507), Expect = 2e-50
Identities = 96/102 (94%), Positives = 99/102 (96%)
Frame = -1
Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 184 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 243
Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 244 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 285
>ref|NP_563953.1| expressed protein; protein id: At1g14530.1, supported by cDNA:
12043., supported by cDNA: gi_15706300 [Arabidopsis
thaliana] gi|15706301|dbj|BAB68339.1| THH1 [Arabidopsis
thaliana]
Length = 293
Score = 199 bits (507), Expect = 2e-50
Identities = 96/102 (94%), Positives = 99/102 (96%)
Frame = -1
Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 192 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 251
Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 252 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
>gb|AAO22624.1| unknown protein [Arabidopsis thaliana]
Length = 293
Score = 199 bits (507), Expect = 2e-50
Identities = 96/102 (94%), Positives = 99/102 (96%)
Frame = -1
Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 192 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 251
Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 252 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,088,192
Number of Sequences: 1393205
Number of extensions: 12980894
Number of successful extensions: 27502
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27500
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENf003h09 |
BP058460 |
1 |
360 |
2 |
SPD099b03_f |
BP051881 |
48 |
483 |
3 |
GNf002g10 |
BP067543 |
144 |
547 |
4 |
MWL057a12_f |
AV769565 |
156 |
613 |
5 |
MFB041f05_f |
BP037001 |
163 |
718 |
|
Lotus japonicus
Kazusa DNA Research Institute