KMC001548A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001548A_C01 KMC001548A_c01
ggaaagatcaaataaacagtacatttcaccaactggtagcagttacaGGACTTAAAAGCT
ATTATACAATATATATCAGTGTCCCCTTCTCCCAAGAAGGTTTGCTATTTGTGTTGAATT
GCTGAACCTGAAAAAACAACAACATATTCCCAGAGACAACGCAAATATCACATATAATAC
AGCCCAACACGTTGGACAATCCATAAAATGTCACGTTACAAAATCTACAAACCTTAAGGG
AGAACTTTTAAAACGTAAGACATTAGCTTGGTCATTCAACATAGAAAAGACTTGACTTTC
TCTGTCCTCTAGAATTTATACTTGGAGTGCAAAAACATCCAAGAAAACAGAGAACAACTA
ATGATGCCTTCTGACTAAGTTTTCTCCACATGTTAATATTCTTTCAGCGAATCGGGTGAT
ATTGTGTGATACCCCGCTTGGGGGGTAACTTCCTCAAAATGAAAAGGACCAAAGAAGAAG
GCAATATTTCCACCAACAGGTAATATATGAAGTTTAGAATGGGATGGTCCAAGACATCGA
GGTCAGCAGCTTTATCAAATGCATCGAAGCACATCATAACACATCTGATAAGGAAGCATG
AAAAACATATGGTGGTCACATAGCCAACCTCTTGCAGCTTCTTACGTCGACCTTnGGACT
CGACAGGAAAGCGTTGAAGCATCAAGAATAATCTCCCACCATAGAGAAGAAA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001548A_C01 KMC001548A_c01
         (712 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana gi...   199  2e-50
gb|AAF43955.1|AC012188_32 Contains similarity to an unknown prot...   199  2e-50
gb|AAM61457.1| unknown [Arabidopsis thaliana]                         199  2e-50
ref|NP_563953.1| expressed protein; protein id: At1g14530.1, sup...   199  2e-50
gb|AAO22624.1| unknown protein [Arabidopsis thaliana]                 199  2e-50

>pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana
           gi|7527730|gb|AAF63179.1|AC010657_15 T5E21.3
           [Arabidopsis thaliana]
          Length = 328

 Score =  199 bits (507), Expect = 2e-50
 Identities = 96/102 (94%), Positives = 99/102 (96%)
 Frame = -1

Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
           FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 227 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 286

Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
           LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 287 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 328

>gb|AAF43955.1|AC012188_32 Contains similarity to an unknown protein from Arabidopsis thaliana
           gb|AC005936.2.  EST gb|AI997527 comes from this gene
          Length = 343

 Score =  199 bits (507), Expect = 2e-50
 Identities = 96/102 (94%), Positives = 99/102 (96%)
 Frame = -1

Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
           FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 242 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 301

Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
           LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 302 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 343

>gb|AAM61457.1| unknown [Arabidopsis thaliana]
          Length = 285

 Score =  199 bits (507), Expect = 2e-50
 Identities = 96/102 (94%), Positives = 99/102 (96%)
 Frame = -1

Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
           FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 184 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 243

Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
           LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 244 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 285

>ref|NP_563953.1| expressed protein; protein id: At1g14530.1, supported by cDNA:
           12043., supported by cDNA: gi_15706300 [Arabidopsis
           thaliana] gi|15706301|dbj|BAB68339.1| THH1 [Arabidopsis
           thaliana]
          Length = 293

 Score =  199 bits (507), Expect = 2e-50
 Identities = 96/102 (94%), Positives = 99/102 (96%)
 Frame = -1

Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
           FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 192 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 251

Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
           LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 252 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293

>gb|AAO22624.1| unknown protein [Arabidopsis thaliana]
          Length = 293

 Score =  199 bits (507), Expect = 2e-50
 Identities = 96/102 (94%), Positives = 99/102 (96%)
 Frame = -1

Query: 712 FLLYGGRLFLMLQRFPVESXGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDV 533
           FLLYGGRLFLMLQRFPVES GRRKKLQEVGYVTTICF+CFLIRC+MMCFDAFD AADLDV
Sbjct: 192 FLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDV 251

Query: 532 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 407
           LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 252 LDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,088,192
Number of Sequences: 1393205
Number of extensions: 12980894
Number of successful extensions: 27502
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27500
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENf003h09 BP058460 1 360
2 SPD099b03_f BP051881 48 483
3 GNf002g10 BP067543 144 547
4 MWL057a12_f AV769565 156 613
5 MFB041f05_f BP037001 163 718




Lotus japonicus
Kazusa DNA Research Institute