Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001545A_C01 KMC001545A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF14005.1| SUP35 homolog [Pichia pastoris] 32 4.5
ref|NP_444296.1| GAP for Ypt protein; Gyp8p [Saccharomyces cerev... 32 7.7
ref|NP_730982.1| CG1109-PA [Drosophila melanogaster] gi|24644363... 32 7.7
>gb|AAF14005.1| SUP35 homolog [Pichia pastoris]
Length = 315
Score = 32.3 bits (72), Expect = 4.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 553 QQHYSLPVDNLGPLGYRSSGSYAGQNSYRMY--DYGNAAPPTYQSPYTLDQTSYRG 392
Q ++ N P Y+ S SY Y+ Y + G A P YQ PY +Y+G
Sbjct: 36 QPSFNPQAQNFVPGQYQESQSYQNYQGYQSYQQNQGFQAQPGYQQPYQQGYQAYQG 91
>ref|NP_444296.1| GAP for Ypt protein; Gyp8p [Saccharomyces cerevisiae]
gi|1175935|sp|P43570|GYP8_YEAST GTPase-activating
protein GYP8 gi|1084691|pir||S56227 probable membrane
protein YFL027c - yeast (Saccharomyces cerevisiae)
gi|836727|dbj|BAA09211.1| YFL027C [Saccharomyces
cerevisiae]
Length = 497
Score = 31.6 bits (70), Expect = 7.7
Identities = 14/26 (53%), Positives = 21/26 (79%)
Frame = +2
Query: 434 SRWSSISIIVHPVAILTCIRTTRSVT 511
+RWS IS+++ VAIL +RTTRS++
Sbjct: 427 NRWSKISLLIGIVAILYQLRTTRSLS 452
>ref|NP_730982.1| CG1109-PA [Drosophila melanogaster] gi|24644363|ref|NP_730983.1|
CG1109-PB [Drosophila melanogaster]
gi|15291701|gb|AAK93119.1| LD24014p [Drosophila
melanogaster] gi|23170399|gb|AAF51974.2| CG1109-PA
[Drosophila melanogaster] gi|23170400|gb|AAN13257.1|
CG1109-PB [Drosophila melanogaster]
Length = 807
Score = 31.6 bits (70), Expect = 7.7
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 571 SPAGISQQHYSLPVDNLGPLGYRSSGSYAGQNSYRMYDYGNAAPPTYQSPYTLDQTSYRG 392
+P+ ++ SLP N+G YR + G N + + P +Q P+ + Q + G
Sbjct: 13 APSALATNFTSLPPPNMGGQHYRHYHPHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDG 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,655,960
Number of Sequences: 1393205
Number of extensions: 9654071
Number of successful extensions: 20572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20560
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
