Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001541A_C01 KMC001541A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG40343.1|AF324991_1 AT4g13930 [Arabidopsis thaliana] 202 3e-51
ref|NP_193129.1| hydroxymethyltransferase; protein id: At4g13930... 202 3e-51
gb|AAM64493.1| hydroxymethyltransferase [Arabidopsis thaliana] 201 8e-51
pir||T05907 glycine hydroxymethyltransferase (EC 2.1.2.1) - barl... 180 1e-44
ref|NP_193125.1| glycine hydroxymethyltransferase - like protein... 180 1e-44
>gb|AAG40343.1|AF324991_1 AT4g13930 [Arabidopsis thaliana]
Length = 471
Score = 202 bits (514), Expect = 3e-51
Identities = 97/114 (85%), Positives = 110/114 (96%)
Frame = -2
Query: 592 NKLEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVS 413
NK+EKLCDLC+IT+NKNAVFGDSSALAPGGVR+GAPAMTSRGLVEKDFEQIGEFL RAV+
Sbjct: 358 NKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVT 417
Query: 412 LTLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYKD 251
LTL+IQ YGKLLKDFNKGLVNNK +++LKADVEKFSAS++MPGFL+SE+KYKD
Sbjct: 418 LTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
>ref|NP_193129.1| hydroxymethyltransferase; protein id: At4g13930.1, supported by
cDNA: 29662., supported by cDNA: gi_13358183, supported
by cDNA: gi_13605526, supported by cDNA: gi_20334773
[Arabidopsis thaliana] gi|7433539|pir||B71400 glycine
hydroxymethyltransferase (EC 2.1.2.1) - Arabidopsis
thaliana gi|2244749|emb|CAB10172.1|
hydroxymethyltransferase [Arabidopsis thaliana]
gi|7268097|emb|CAB78435.1| hydroxymethyltransferase
[Arabidopsis thaliana]
gi|13605527|gb|AAK32757.1|AF361589_1 AT4g13930/dl3005c
[Arabidopsis thaliana] gi|20334774|gb|AAM16248.1|
AT4g13930/dl3005c [Arabidopsis thaliana]
Length = 471
Score = 202 bits (514), Expect = 3e-51
Identities = 97/114 (85%), Positives = 110/114 (96%)
Frame = -2
Query: 592 NKLEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVS 413
NK+EKLCDLC+IT+NKNAVFGDSSALAPGGVR+GAPAMTSRGLVEKDFEQIGEFL RAV+
Sbjct: 358 NKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVT 417
Query: 412 LTLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYKD 251
LTL+IQ YGKLLKDFNKGLVNNK +++LKADVEKFSAS++MPGFL+SE+KYKD
Sbjct: 418 LTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
>gb|AAM64493.1| hydroxymethyltransferase [Arabidopsis thaliana]
Length = 471
Score = 201 bits (510), Expect = 8e-51
Identities = 96/114 (84%), Positives = 110/114 (96%)
Frame = -2
Query: 592 NKLEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVS 413
NK+EKLCDLC+IT+NKNAVFGDSSALAPGGVR+GAPAMTSRGLVEKDFEQIGEFL RAV+
Sbjct: 358 NKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVT 417
Query: 412 LTLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYKD 251
LTL+IQ YGKLLKDFNKGLVNNK +++LKADVEKFSAS++MPGFL+SE+KY+D
Sbjct: 418 LTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYQD 471
>pir||T05907 glycine hydroxymethyltransferase (EC 2.1.2.1) - barley (fragment)
gi|2274988|emb|CAA03953.1| partial sequence, homology to
serine hydroxymethyltransferases [Hordeum vulgare subsp.
vulgare]
Length = 111
Score = 180 bits (457), Expect = 1e-44
Identities = 85/111 (76%), Positives = 100/111 (89%)
Frame = -2
Query: 586 LEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLT 407
+EK+CDLC+IT+NKNAVFGDSSAL+PGGVR+GAPAMTSRGLVEKDFEQI EFLH+AV++
Sbjct: 1 VEKMCDLCSITLNKNAVFGDSSALSPGGVRIGAPAMTSRGLVEKDFEQIAEFLHQAVTIC 60
Query: 406 LEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYK 254
L IQ E+GKLLKDF+KGLVNNK IE LK +VEKF+ SFDMPGF + +KYK
Sbjct: 61 LNIQKEHGKLLKDFSKGLVNNKDIENLKVEVEKFALSFDMPGFTLESMKYK 111
>ref|NP_193125.1| glycine hydroxymethyltransferase - like protein; protein id:
At4g13890.1 [Arabidopsis thaliana]
gi|7433549|pir||T05258 glycine hydroxymethyltransferase
(EC 2.1.2.1) F18A5.280 - Arabidopsis thaliana
gi|4455318|emb|CAB36853.1| glycine
hydroxymethyltransferase-like protein [Arabidopsis
thaliana] gi|7268093|emb|CAB78431.1| glycine
hydroxymethyltransferase-like protein [Arabidopsis
thaliana]
Length = 470
Score = 180 bits (456), Expect = 1e-44
Identities = 82/109 (75%), Positives = 101/109 (92%)
Frame = -2
Query: 592 NKLEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVS 413
NK+EK+C+LC IT+N+NAVFGD+S LAPGGVR+G PAMTSRGLVEKDFE+IGEFLHRAV+
Sbjct: 358 NKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVT 417
Query: 412 LTLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSE 266
+TL+IQ +YGK++KDFNKGLVNNK I+E+KADVE+F+ FDMPGF +SE
Sbjct: 418 ITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISE 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,893,908
Number of Sequences: 1393205
Number of extensions: 10875552
Number of successful extensions: 30900
Number of sequences better than 10.0: 280
Number of HSP's better than 10.0 without gapping: 29581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30737
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
