Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001540A_C01 KMC001540A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39817|CALX_SOYBN CALNEXIN HOMOLOG PRECURSOR gi|7441504|pir||... 335 3e-91
sp|Q39994|CALX_HELTU Calnexin homolog precursor gi|7441505|pir||... 315 4e-85
sp|O82709|CALX_PEA Calnexin homolog precursor gi|3702620|emb|CAA... 313 9e-85
emb|CAD40786.1| OSJNBb0012E08.10 [Oryza sativa (japonica cultiva... 307 6e-83
ref|NP_200987.1| calnexin - like protein; protein id: At5g61790.... 298 3e-80
>sp|Q39817|CALX_SOYBN CALNEXIN HOMOLOG PRECURSOR gi|7441504|pir||T06415 calnexin -
soybean gi|669003|gb|AAA80588.1| calnexin
Length = 546
Score = 335 bits (859), Expect = 3e-91
Identities = 161/204 (78%), Positives = 179/204 (86%), Gaps = 6/204 (2%)
Frame = +2
Query: 23 MGEPKRTPL---LIFAVLLVISTSSLQFLSASDDA---IFYESFDEDFEGRWIVSQKDEY 184
MGE K P+ L+ +L I++SS + ASDDA IFYESFDEDF+GRWIVS K++Y
Sbjct: 1 MGERKGIPMALGLLAMILFFIASSSSHLVRASDDADDAIFYESFDEDFDGRWIVSDKEDY 60
Query: 185 NGAWKHDKSEGHDDYGLLVSEKARKYAIVKELDEPVKLKDESVVLQFETRLQNGLECGGA 364
NG WKH KS+GHDDYGLLVSE+ARKYAIVKEL E V LKD +VVLQFETRLQNGLECGGA
Sbjct: 61 NGVWKHAKSDGHDDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGA 120
Query: 365 YLKYLRPQEAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFP 544
Y+KYLRPQE+GWK KEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLK+P
Sbjct: 121 YIKYLRPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYP 180
Query: 545 PSVPSDKLSHVYTAVLKPDNELEI 616
PSVPSDKL+HVYTA+LKPDNEL+I
Sbjct: 181 PSVPSDKLTHVYTAILKPDNELQI 204
>sp|Q39994|CALX_HELTU Calnexin homolog precursor gi|7441505|pir||T10892 probable calnexin
- Jerusalem artichoke gi|510907|emb|CAA84491.1| calnexin
[Helianthus tuberosus]
Length = 540
Score = 315 bits (806), Expect = 4e-85
Identities = 144/173 (83%), Positives = 160/173 (92%)
Frame = +2
Query: 98 LSASDDAIFYESFDEDFEGRWIVSQKDEYNGAWKHDKSEGHDDYGLLVSEKARKYAIVKE 277
+ AS DAIFYESFDE FEG WIVS+K++Y G WKH KSEGHDDYGLLVS+KARKYAIVKE
Sbjct: 27 ICASSDAIFYESFDESFEGSWIVSEKEDYPGEWKHSKSEGHDDYGLLVSDKARKYAIVKE 86
Query: 278 LDEPVKLKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKSKEFDNESPYSIMFGPDK 457
L++PV+LKD ++VLQ+E RLQNGLECGGAYLKYLRPQ+AGW +K FDNESPYSIMFGPDK
Sbjct: 87 LEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDK 146
Query: 458 CGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYTAVLKPDNELEI 616
CGATNKVHFI KHKNPKSG+YVEHHLKFPPSVPSDKL+HVYTAV+KPDNEL I
Sbjct: 147 CGATNKVHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVI 199
>sp|O82709|CALX_PEA Calnexin homolog precursor gi|3702620|emb|CAA76741.1| calnexin
[Pisum sativum]
Length = 551
Score = 313 bits (803), Expect = 9e-85
Identities = 156/205 (76%), Positives = 173/205 (84%), Gaps = 7/205 (3%)
Frame = +2
Query: 23 MGEPKRTPLL--IFAVLL--VISTSSLQFLSASD---DAIFYESFDEDFEGRWIVSQKDE 181
M + K PL + AVLL V S+SS + ASD DAIFYESFDEDF+ RWIVS K+E
Sbjct: 1 MVDRKEIPLAMGLLAVLLFFVASSSSFHLVRASDEVDDAIFYESFDEDFDNRWIVSGKEE 60
Query: 182 YNGAWKHDKSEGHDDYGLLVSEKARKYAIVKELDEPVKLKDESVVLQFETRLQNGLECGG 361
YNG WKH KSEGHDD+GLLVSE ARKYAIVKELD PV LKD +VVLQFETRLQNGLECGG
Sbjct: 61 YNGVWKHSKSEGHDDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGG 120
Query: 362 AYLKYLRPQEAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKF 541
AY+KYL+ QE+GWK K FDNES YSIMFGPD+CGATNKVHFIF+HKNPK+G++VEHHLKF
Sbjct: 121 AYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKF 180
Query: 542 PPSVPSDKLSHVYTAVLKPDNELEI 616
PPSVPSDKLSHVYTAVLK DNE+ I
Sbjct: 181 PPSVPSDKLSHVYTAVLKDDNEVSI 205
>emb|CAD40786.1| OSJNBb0012E08.10 [Oryza sativa (japonica cultivar-group)]
Length = 537
Score = 307 bits (787), Expect = 6e-83
Identities = 141/191 (73%), Positives = 164/191 (85%)
Frame = +2
Query: 44 PLLIFAVLLVISTSSLQFLSASDDAIFYESFDEDFEGRWIVSQKDEYNGAWKHDKSEGHD 223
PLL+ + LLV +S D +FYE FDE FEGRW++S KD+Y G WKH+KS+GH+
Sbjct: 9 PLLLLSALLVQIRAS--------DPLFYEPFDESFEGRWVLSGKDDYKGVWKHEKSDGHE 60
Query: 224 DYGLLVSEKARKYAIVKELDEPVKLKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWK 403
DYGLLVSEKA+KYAI+KELDEPV LKD +VVLQFE RLQNGLECGGAYLKY+RPQ+A W
Sbjct: 61 DYGLLVSEKAKKYAIIKELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWD 120
Query: 404 SKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYT 583
+KEFDNE+PY+IMFGPDKCG+TNKVHFI KHKNPK+G+YVEHHLKFPPSVP DKLSHVYT
Sbjct: 121 AKEFDNETPYTIMFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYT 180
Query: 584 AVLKPDNELEI 616
A+LKPDNE+ I
Sbjct: 181 AILKPDNEVRI 191
>ref|NP_200987.1| calnexin - like protein; protein id: At5g61790.1, supported by
cDNA: 2869., supported by cDNA: gi_15292686, supported
by cDNA: gi_16649020 [Arabidopsis thaliana]
gi|231683|sp|P29402|CAX1_ARATH Calnexin homolog 1
precursor gi|421825|pir||JN0597 calnexin-like protein -
Arabidopsis thaliana gi|16211|emb|CAA79144.1| calnexin
homolog [Arabidopsis thaliana]
gi|10176872|dbj|BAB10079.1| calnexin homolog precursor
[Arabidopsis thaliana] gi|16649021|gb|AAL24362.1|
calnexin homolog precursor [Arabidopsis thaliana]
gi|21387169|gb|AAM47988.1| calnexin-like protein
precursor [Arabidopsis thaliana]
gi|21555674|gb|AAM63911.1| calnexin-like protein
[Arabidopsis thaliana]
Length = 530
Score = 298 bits (764), Expect = 3e-80
Identities = 142/190 (74%), Positives = 160/190 (83%), Gaps = 2/190 (1%)
Frame = +2
Query: 53 IFAV-LLVISTSSLQFLSASDD-AIFYESFDEDFEGRWIVSQKDEYNGAWKHDKSEGHDD 226
+F+V LL+++ S Q L DD + YESFDE F+GRWIVS+ +Y G WKH KSEGH+D
Sbjct: 6 LFSVFLLLLAFVSFQKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHED 65
Query: 227 YGLLVSEKARKYAIVKELDEPVKLKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKS 406
YGLLVSEKARKY IVKELDEP+ LK+ +VVLQ+E R Q GLECGGAYLKYLRPQEAGW
Sbjct: 66 YGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTP 125
Query: 407 KEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYTA 586
+ FD+ESPYSIMFGPDKCG TNKVHFI KHKNPKSGEYVEHHLKFPPSVP DKLSHVYTA
Sbjct: 126 QGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTA 185
Query: 587 VLKPDNELEI 616
+LKPDNE+ I
Sbjct: 186 ILKPDNEVRI 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,839,247
Number of Sequences: 1393205
Number of extensions: 12478591
Number of successful extensions: 46114
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 42306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45299
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
