Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001539A_C01 KMC001539A_c01
(912 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566642.1| expressed protein; protein id: At3g19540.1, sup... 86 6e-16
ref|NP_175406.1| unknown protein; protein id: At1g49840.1, suppo... 77 3e-13
ref|NP_564291.1| putative lipase; protein id: At1g27690.1, suppo... 66 8e-10
ref|NP_196279.1| putative protein; protein id: At5g06610.1, supp... 56 9e-07
gb|AAM66006.1| unknown [Arabidopsis thaliana] 56 9e-07
>ref|NP_566642.1| expressed protein; protein id: At3g19540.1, supported by cDNA:
gi_15809985 [Arabidopsis thaliana]
gi|9294124|dbj|BAB01975.1|
gb|AAF24946.1~gene_id:T31J18.4~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|15809986|gb|AAL06920.1| AT3g19540/T31J18_4
[Arabidopsis thaliana] gi|22137022|gb|AAM91356.1|
At3g19540/T31J18_4 [Arabidopsis thaliana]
Length = 485
Score = 86.3 bits (212), Expect = 6e-16
Identities = 41/64 (64%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = -3
Query: 910 MEEAWTIEEVAFNVPGLSVDCFIPPSELKFASMSEACELPQGQRVKTSVVA-GAAYHAKV 734
MEE+WTIEEVAFNVPGLS+DCFIPP++LK S++E+CE PQ +R K + +A AA+ AKV
Sbjct: 407 MEESWTIEEVAFNVPGLSLDCFIPPADLKTGSLTESCEYPQEERGKNNTLALSAAHRAKV 466
Query: 733 AQLQ 722
A L+
Sbjct: 467 AALE 470
>ref|NP_175406.1| unknown protein; protein id: At1g49840.1, supported by cDNA:
gi_17529261, supported by cDNA: gi_20258938 [Arabidopsis
thaliana] gi|25344238|pir||C96535 unknown protein,
20579-22493 [imported] - Arabidopsis thaliana
gi|12323601|gb|AAG51777.1|AC079674_10 unknown protein;
20579-22493 [Arabidopsis thaliana]
gi|17529262|gb|AAL38858.1| unknown protein [Arabidopsis
thaliana] gi|20258939|gb|AAM14185.1| unknown protein
[Arabidopsis thaliana]
Length = 494
Score = 77.4 bits (189), Expect = 3e-13
Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Frame = -3
Query: 910 MEEAWTIEEVAFNVPGLSVDCFIPPSELKFASMSEACELP-QGQRVKTSVVAGA--AYHA 740
MEE WTIEEVAFNVPGLS+DCFIPP++L+ S++EACE Q ++ K+S+ + A+ A
Sbjct: 415 MEERWTIEEVAFNVPGLSLDCFIPPADLRSGSLTEACEYSGQEEKGKSSLALASTTAHRA 474
Query: 739 KVAQLQKSHESN 704
KVA L+K N
Sbjct: 475 KVAALEKGSFDN 486
>ref|NP_564291.1| putative lipase; protein id: At1g27690.1, supported by cDNA:
118034., supported by cDNA: gi_20259471 [Arabidopsis
thaliana] gi|20259472|gb|AAM13856.1| putative lipase
[Arabidopsis thaliana] gi|21436213|gb|AAM51394.1|
putative lipase [Arabidopsis thaliana]
Length = 433
Score = 65.9 bits (159), Expect = 8e-10
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = -3
Query: 910 MEEAWTIEEVAFNVPGLSVDCFIPPSELKFASMSEACELPQGQRVKT 770
M+EAW I+E++FNVPGLS+DCFIPPSEL+F S E +L QG +++T
Sbjct: 382 MQEAWVIDEISFNVPGLSIDCFIPPSELRFDSHVE--DLSQGPKIRT 426
>ref|NP_196279.1| putative protein; protein id: At5g06610.1, supported by cDNA:
6949., supported by cDNA: gi_13899058, supported by
cDNA: gi_20148282 [Arabidopsis thaliana]
gi|10178117|dbj|BAB11410.1|
gb|AAD30234.1~gene_id:F15M7.14~similar to unknown
protein [Arabidopsis thaliana]
gi|13899059|gb|AAK48951.1|AF370524_1 Unknown protein
[Arabidopsis thaliana] gi|20148283|gb|AAM10032.1|
unknown protein [Arabidopsis thaliana]
Length = 368
Score = 55.8 bits (133), Expect = 9e-07
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -3
Query: 910 MEEAWTIEEVAFNVPGLSVDCFIPPSELK 824
MEE WTI++VAF+VPGLSVDCFIPP E+K
Sbjct: 323 MEEKWTIDDVAFDVPGLSVDCFIPPKEMK 351
>gb|AAM66006.1| unknown [Arabidopsis thaliana]
Length = 368
Score = 55.8 bits (133), Expect = 9e-07
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -3
Query: 910 MEEAWTIEEVAFNVPGLSVDCFIPPSELK 824
MEE WTI++VAF+VPGLSVDCFIPP E+K
Sbjct: 323 MEEKWTIDDVAFDVPGLSVDCFIPPKEMK 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 725,026,010
Number of Sequences: 1393205
Number of extensions: 14440508
Number of successful extensions: 30958
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 29968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30955
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49918505760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
