Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001538A_C01 KMC001538A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98165.1| RAB2A [Lotus japonicus] 197 9e-50
pir||S71559 GTP-binding protein rab2 - soybean gi|1208537|gb|AAA... 197 9e-50
ref|NP_193450.1| GTP-binding protein (At-RAB2); protein id: At4g... 187 1e-46
gb|AAL28022.1| small GTPase Rab2 [Nicotiana tabacum] 186 2e-46
pir||E71440 GTP-binding protein RAB2A - Arabidopsis thaliana 180 1e-44
>emb|CAA98165.1| RAB2A [Lotus japonicus]
Length = 211
Score = 197 bits (500), Expect = 9e-50
Identities = 96/101 (95%), Positives = 100/101 (98%)
Frame = -2
Query: 555 NMTIMLIGHQCDLAHRRAVSTEEGDQFAKEPGLIFMEASAKTAQNVEEAFIKTAATIYQK 376
NMTIMLIG++CDLAHRRAVSTEEG+QFAKE GLIFMEASAKTAQNVEEAFIKTAATIY+K
Sbjct: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
Query: 375 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 253
IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS
Sbjct: 171 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211
>pir||S71559 GTP-binding protein rab2 - soybean gi|1208537|gb|AAA90955.1|
guanine nucleotide regulatory protein [Glycine max]
Length = 211
Score = 197 bits (500), Expect = 9e-50
Identities = 96/101 (95%), Positives = 100/101 (98%)
Frame = -2
Query: 555 NMTIMLIGHQCDLAHRRAVSTEEGDQFAKEPGLIFMEASAKTAQNVEEAFIKTAATIYQK 376
NMTIMLIG++CDLAHRRAVSTEEG+QFAKE GLIFMEASAKTAQNVEEAFIKTAATIY+K
Sbjct: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
Query: 375 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 253
IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS
Sbjct: 171 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211
>ref|NP_193450.1| GTP-binding protein (At-RAB2); protein id: At4g17170.1 [Arabidopsis
thaliana] gi|25294122|pir||H85191 GTP-binding RAB2A like
protein [imported] - Arabidopsis thaliana
gi|1765896|emb|CAA70498.1| Rab2-like protein
[Arabidopsis thaliana] gi|5281023|emb|CAB45962.1|
GTP-binding RAB2A like protein [Arabidopsis thaliana]
gi|7268468|emb|CAB80988.1| GTP-binding RAB2A like
protein [Arabidopsis thaliana]
gi|27311815|gb|AAO00873.1| GTP-binding RAB2A like
protein [Arabidopsis thaliana]
Length = 211
Score = 187 bits (474), Expect = 1e-46
Identities = 90/100 (90%), Positives = 96/100 (96%)
Frame = -2
Query: 555 NMTIMLIGHQCDLAHRRAVSTEEGDQFAKEPGLIFMEASAKTAQNVEEAFIKTAATIYQK 376
NMTIMLIG++CDLAHRRAVSTEEG+QFAKE GLIFMEASAKTAQNVEEAFIKTAATIY+K
Sbjct: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
Query: 375 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCC 256
IQDGVFDVSNESYGIKVGYGGIPGPSGGRDG ++ GGCC
Sbjct: 171 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210
>gb|AAL28022.1| small GTPase Rab2 [Nicotiana tabacum]
Length = 211
Score = 186 bits (472), Expect = 2e-46
Identities = 89/101 (88%), Positives = 97/101 (95%)
Frame = -2
Query: 555 NMTIMLIGHQCDLAHRRAVSTEEGDQFAKEPGLIFMEASAKTAQNVEEAFIKTAATIYQK 376
NMTIMLIG++CDLAHRRAVSTEEG+QFAKE GLIFMEASAKTAQNVEEAFI+TA+TIY+K
Sbjct: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIRTASTIYKK 170
Query: 375 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 253
IQDGVFDVSNESYGIKVGYGGIPGPSGGRDG ++ GGCCS
Sbjct: 171 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 211
>pir||E71440 GTP-binding protein RAB2A - Arabidopsis thaliana
Length = 208
Score = 180 bits (456), Expect = 1e-44
Identities = 88/98 (89%), Positives = 94/98 (95%)
Frame = -2
Query: 555 NMTIMLIGHQCDLAHRRAVSTEEGDQFAKEPGLIFMEASAKTAQNVEEAFIKTAATIYQK 376
NMTIMLIG++CDLAHRRAVSTEEG+QFAKE GLIFMEASAKTAQNVEEAFIKTAATIY+K
Sbjct: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
Query: 375 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGG 262
IQDGVFDVSNESYGIKVGYGGIPGPSGGRDG ++ GG
Sbjct: 171 IQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGG 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,846,669
Number of Sequences: 1393205
Number of extensions: 11164393
Number of successful extensions: 46734
Number of sequences better than 10.0: 1104
Number of HSP's better than 10.0 without gapping: 37889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46121
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
