Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001537A_C01 KMC001537A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43070|GAE1_PEA UDP-glucose 4-epimerase (Galactowaldenase) (U... 222 2e-57
sp|O65780|GAE1_CYATE UDP-glucose 4-epimerase GEPI42 (Galactowald... 219 2e-56
ref|NP_172738.1| uridine diphosphate glucose epimerase; protein ... 204 7e-52
pir||S62783 UDPglucose 4-epimerase (EC 5.1.3.2) - Arabidopsis th... 202 2e-51
pir||D96657 hypothetical protein F16M19.8 [imported] - Arabidops... 201 6e-51
>sp|Q43070|GAE1_PEA UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose
4-epimerase) gi|7437228|pir||T06526 UDPglucose
4-epimerase (EC 5.1.3.2) - garden pea
gi|1173555|gb|AAA86532.1| UDP-galactose-4-epimerase
Length = 350
Score = 222 bits (566), Expect = 2e-57
Identities = 103/111 (92%), Positives = 106/111 (94%)
Frame = -2
Query: 544 DYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLC 365
DYIHVMDLADGHIAALRKLFT+ENIGCTAYNLGTGRG+SVLEMV AFEKASGKKI +KLC
Sbjct: 240 DYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGKKIALKLC 299
Query: 364 PRRPGDATEVYASTEKAEKELSWKAKYGVEEMCRDPWNWAKNNPWGYSGKP 212
PRRPGDATEVYAST KAEKEL WKAKYGVEEMCRD WNWAKNNPWGYSGKP
Sbjct: 300 PRRPGDATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGYSGKP 350
>sp|O65780|GAE1_CYATE UDP-glucose 4-epimerase GEPI42 (Galactowaldenase) (UDP-galactose
4-epimerase) gi|7437271|pir||T10496 UDPglucose
4-epimerase (EC 5.1.3.2) (clone GEPI42) - guar
gi|3021355|emb|CAA06338.1| UDP-galactose 4-epimerase
[Cyamopsis tetragonoloba]
Length = 354
Score = 219 bits (557), Expect = 2e-56
Identities = 100/110 (90%), Positives = 103/110 (92%)
Frame = -2
Query: 544 DYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLC 365
DYIHVMDLADGHIAALRKLFTT+NIGCTAYNLGTGRGTSVLEMV AFEKASGKKIP+K+C
Sbjct: 244 DYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPIKMC 303
Query: 364 PRRPGDATEVYASTEKAEKELSWKAKYGVEEMCRDPWNWAKNNPWGYSGK 215
PRRPGDAT VYASTEKAEKEL WKAKYGVEEMCRD W WA NNPWGY GK
Sbjct: 304 PRRPGDATAVYASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQGK 353
>ref|NP_172738.1| uridine diphosphate glucose epimerase; protein id: At1g12780.1,
supported by cDNA: gi_12248020, supported by cDNA:
gi_15809879 [Arabidopsis thaliana]
gi|12643760|sp|Q42605|GAE1_ARATH UDP-glucose 4-epimerase
(Galactowaldenase) (UDP-galactose 4-epimerase)
gi|25292362|pir||B86261 UDPglucose 4-epimerase (EC
5.1.3.2) [imported] - Arabidopsis thaliana
gi|8698725|gb|AAF78483.1|AC012187_3 Strong similarity to
UDPglucose 4-epimerase from Arabidopsis thaliana
gi|2129759 and is a member of the NAD dependent
Epimerase/Dehydratase PF|01370 family. ESTs
gb|AI100184, gb|T22969, gb|T22968, gb|H76416,
gb|AI998807 come from this gene
gi|12248021|gb|AAG50102.1|AF334724_1 putative uridine
diphosphate glucose epimerase [Arabidopsis thaliana]
gi|15809880|gb|AAL06868.1| At1g12780/F13K23_21
[Arabidopsis thaliana] gi|21539429|gb|AAM53267.1|
uridine diphosphate glucose epimerase [Arabidopsis
thaliana] gi|23197648|gb|AAN15351.1| uridine diphosphate
glucose epimerase [Arabidopsis thaliana]
Length = 351
Score = 204 bits (518), Expect = 7e-52
Identities = 94/110 (85%), Positives = 97/110 (87%)
Frame = -2
Query: 544 DYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLC 365
DYIHVMDLADGHIAALRKLF IGCTAYNLGTG+GTSVLEMV AFEKASGKKIP+KLC
Sbjct: 241 DYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLC 300
Query: 364 PRRPGDATEVYASTEKAEKELSWKAKYGVEEMCRDPWNWAKNNPWGYSGK 215
PRR GDAT VYASTEKAEKEL WKAKYGV+EMCRD W WA NNPWGY K
Sbjct: 301 PRRSGDATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQNK 350
>pir||S62783 UDPglucose 4-epimerase (EC 5.1.3.2) - Arabidopsis thaliana
gi|1143392|emb|CAA90941.1| uridine diphosphate glucose
epimerase [Arabidopsis thaliana]
Length = 351
Score = 202 bits (515), Expect = 2e-51
Identities = 94/110 (85%), Positives = 97/110 (87%)
Frame = -2
Query: 544 DYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLC 365
DYIHVMDLADGHIAALRKLF IGCTAYNLGTG+GTSVLEMV AFEKASGKKIP+KLC
Sbjct: 241 DYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLC 300
Query: 364 PRRPGDATEVYASTEKAEKELSWKAKYGVEEMCRDPWNWAKNNPWGYSGK 215
PRR GDAT VYASTEKAEKEL WKAKYGV+EMCRD W WA NNPWGY K
Sbjct: 301 PRRSGDATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWAFNNPWGYQNK 350
>pir||D96657 hypothetical protein F16M19.8 [imported] - Arabidopsis thaliana
gi|12323247|gb|AAG51599.1|AC010795_3 uridine diphosphate
glucose epimerase, putative; 80611-78786 [Arabidopsis
thaliana]
Length = 353
Score = 201 bits (510), Expect = 6e-51
Identities = 90/111 (81%), Positives = 99/111 (89%)
Frame = -2
Query: 544 DYIHVMDLADGHIAALRKLFTTENIGCTAYNLGTGRGTSVLEMVTAFEKASGKKIPVKLC 365
DYIHVMDLADGH+AAL KLF+ IGCTAYNLGTG+GTSVLEMV++FEKASGKKIP+KLC
Sbjct: 243 DYIHVMDLADGHVAALNKLFSDSKIGCTAYNLGTGQGTSVLEMVSSFEKASGKKIPIKLC 302
Query: 364 PRRPGDATEVYASTEKAEKELSWKAKYGVEEMCRDPWNWAKNNPWGYSGKP 212
PRR GDAT VYAST+KAEKEL WKAKYGV+EMCRD WNWA NPWG+ KP
Sbjct: 303 PRRAGDATAVYASTQKAEKELGWKAKYGVDEMCRDQWNWANKNPWGFQKKP 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,743,720
Number of Sequences: 1393205
Number of extensions: 11476361
Number of successful extensions: 27713
Number of sequences better than 10.0: 459
Number of HSP's better than 10.0 without gapping: 26597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27418
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
