Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001535A_C01 KMC001535A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36413.1| putative peptide transporter protein [Arabidopsis... 64 5e-17
ref|NP_199417.1| peptide transporter; protein id: At5g46050.1, s... 63 6e-17
dbj|BAB19758.1| putative nitrate transporter NRT1-3 [Glycine max] 48 8e-12
ref|NP_199416.1| peptide transporter; protein id: At5g46040.1 [A... 68 1e-10
ref|NP_190982.1| peptide transport - like protein; protein id: A... 51 9e-09
>gb|AAL36413.1| putative peptide transporter protein [Arabidopsis thaliana]
Length = 582
Score = 63.5 bits (153), Expect(2) = 5e-17
Identities = 29/51 (56%), Positives = 37/51 (71%)
Frame = -3
Query: 531 TKKHSHQGWILDNLNISRLDYYYAFMVILSFLNFLCFLVTAKFFDYNVDVT 379
TKK +GWIL+NLN SRLDYYY F +L+ +NF+ FLV KF+ Y +VT
Sbjct: 519 TKKRG-RGWILNNLNESRLDYYYLFFAVLNLVNFILFLVVVKFYVYRAEVT 568
Score = 45.8 bits (107), Expect(2) = 5e-17
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -2
Query: 622 MGSLGISYSTTSVALGCFLSSFLLSTVADINQE 524
M SLG SYSTTS+A+G F+SSFLLSTV++I ++
Sbjct: 489 MKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKK 521
>ref|NP_199417.1| peptide transporter; protein id: At5g46050.1, supported by cDNA:
gi_17381201 [Arabidopsis thaliana]
gi|9757725|dbj|BAB08250.1| peptide transporter
[Arabidopsis thaliana] gi|23297791|gb|AAN13027.1|
peptide transporter [Arabidopsis thaliana]
Length = 582
Score = 63.2 bits (152), Expect(2) = 6e-17
Identities = 29/51 (56%), Positives = 37/51 (71%)
Frame = -3
Query: 531 TKKHSHQGWILDNLNISRLDYYYAFMVILSFLNFLCFLVTAKFFDYNVDVT 379
TKK +GWIL+NLN SRLDYYY F +L+ +NF+ FLV KF+ Y +VT
Sbjct: 519 TKKRG-RGWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVT 568
Score = 45.8 bits (107), Expect(2) = 6e-17
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -2
Query: 622 MGSLGISYSTTSVALGCFLSSFLLSTVADINQE 524
M SLG SYSTTS+A+G F+SSFLLSTV++I ++
Sbjct: 489 MKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKK 521
>dbj|BAB19758.1| putative nitrate transporter NRT1-3 [Glycine max]
Length = 574
Score = 48.1 bits (113), Expect(2) = 8e-12
Identities = 20/28 (71%), Positives = 23/28 (81%)
Frame = -3
Query: 531 TKKHSHQGWILDNLNISRLDYYYAFMVI 448
TKK+ H+GWIL+NLN S LDYYYAF I
Sbjct: 521 TKKNGHKGWILNNLNESHLDYYYAFFAI 548
Score = 43.5 bits (101), Expect(2) = 8e-12
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = -2
Query: 622 MGSLGISYSTTSVALGCFLSSFLLSTVADINQETQSPG 509
M S+G SYSTT++ LG F+SSFLLSTV++I ++ G
Sbjct: 491 MKSIGTSYSTTTLGLGNFISSFLLSTVSNITKKNGHKG 528
>ref|NP_199416.1| peptide transporter; protein id: At5g46040.1 [Arabidopsis thaliana]
gi|9757724|dbj|BAB08249.1| peptide transporter
[Arabidopsis thaliana]
Length = 586
Score = 67.8 bits (164), Expect = 1e-10
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = -3
Query: 567 SVVFFCQLLLIST----KKHSHQGWILDNLNISRLDYYYAFMVILSFLNFLCFLVTAKFF 400
+V +F +L+S+ K +GWI +NLN SRLD YY F +L+ LNF+ FLV +F+
Sbjct: 502 AVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFY 561
Query: 399 DYNVDVTHEKSGSELNPASLDN 334
+Y DVT + + P +DN
Sbjct: 562 EYRADVTQSANVEQKEPNMVDN 583
Score = 38.5 bits (88), Expect = 0.073
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = -2
Query: 622 MGSLGISYSTTSVALGCFLSSFLLSTVADINQE 524
M SLG SY++TS+A+G F+SS LLS+V+ I ++
Sbjct: 489 MKSLGTSYTSTSMAVGYFMSSILLSSVSQITKK 521
>ref|NP_190982.1| peptide transport - like protein; protein id: At3g54140.1,
supported by cDNA: 117581., supported by cDNA:
gi_13430485, supported by cDNA: gi_21280968 [Arabidopsis
thaliana] gi|11358607|pir||T47573 peptide transport-like
protein - Arabidopsis thaliana
gi|6822060|emb|CAB70988.1| peptide transport-like
protein [Arabidopsis thaliana]
gi|13430486|gb|AAK25865.1|AF360155_1 putative peptide
transport protein [Arabidopsis thaliana]
gi|21280969|gb|AAM44932.1| putative peptide transport
protein [Arabidopsis thaliana]
gi|21537000|gb|AAM61341.1| peptide transport-like
protein [Arabidopsis thaliana]
Length = 570
Score = 51.2 bits (121), Expect(2) = 9e-09
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3
Query: 531 TKKHSHQGWILDNLNISRLDYYYAFMVILSFLNFLCFLVTAKFFDY 394
TKK+ GWI DNLN LDY++ + LSFLNFL +L +K + Y
Sbjct: 517 TKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562
Score = 30.0 bits (66), Expect(2) = 9e-09
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2
Query: 622 MGSLGISYSTTSVALGCFLSSFLLSTVADINQETQSPG 509
M SL + S T+VALG +LS+ L++ V I ++ PG
Sbjct: 487 MRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPG 524
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,251,814
Number of Sequences: 1393205
Number of extensions: 10209288
Number of successful extensions: 21909
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 21380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21899
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
