Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001533A_C01 KMC001533A_c01
(800 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172333.1| putative thioredoxin; protein id: At1g08570.1, ... 39 0.12
gb|AAA33400.1| thioredoxin 35 1.7
gb|ZP_00112188.1| hypothetical protein [Nostoc punctiforme] 33 4.9
gb|AAO22913.1| YgbF-like protein [Myxococcus xanthus] 32 8.3
>ref|NP_172333.1| putative thioredoxin; protein id: At1g08570.1, supported by cDNA:
gi_17104800, supported by cDNA: gi_4973255 [Arabidopsis
thaliana] gi|7488368|pir||T00710 thioredoxin homolog
F22O13.5 - Arabidopsis thaliana
gi|4973256|gb|AAD35005.1|AF144387_1 thioredoxin-like 1
[Arabidopsis thaliana]
gi|9802552|gb|AAF99754.1|AC003981_4 F22O13.5
[Arabidopsis thaliana] gi|14334494|gb|AAK59444.1|
putative thioredoxin [Arabidopsis thaliana]
gi|17104801|gb|AAL34289.1| putative thioredoxin
[Arabidopsis thaliana]
Length = 275
Score = 38.5 bits (88), Expect = 0.12
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = -2
Query: 799 ANRDLSFTYSPLQPAHSPANEEFATEAAPESLPLPSLTSKSESSEQRTLTTAGR 638
AN++L+FTY+P +P P +E AT + SLP+P L S S S++++TL +AGR
Sbjct: 227 ANKELNFTYTP-KPV--PVEKEAATPDSNPSLPVP-LPSMS-SNDEKTLVSAGR 275
>gb|AAA33400.1| thioredoxin
Length = 262
Score = 34.7 bits (78), Expect = 1.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = -2
Query: 799 ANRDLSFTYSPLQPAHSPANEEFATEAAPESLPLPSLTSK----SESSEQRTLTTAGR 638
ANR+L F+Y+P +P H P ++ P++LP P+ S + +E++ L AGR
Sbjct: 213 ANRELGFSYTP-KPEHEPVHQ-------PDALPKPARPSPKVPLTRDAEEKVLAGAGR 262
>gb|ZP_00112188.1| hypothetical protein [Nostoc punctiforme]
Length = 584
Score = 33.1 bits (74), Expect = 4.9
Identities = 27/85 (31%), Positives = 43/85 (49%), Gaps = 1/85 (1%)
Frame = -1
Query: 668 GTENPDHCWEMMWPVCKQTP-SFDFMYVWISAELYANGERIA*NPLYSIGLVKLLRFGEV 492
G E+ H W+++ C+Q+ F +Y + +L GE NPL S G+V+ ++
Sbjct: 227 GAEDTLHAWKLL---CEQSRREFQVIYELLDIKLTERGESFY-NPLLS-GIVE-----DL 276
Query: 491 ASLGIPFENEGIIEDQVTKCVFLQG 417
G+ EN+G KCVFL+G
Sbjct: 277 EKSGLLVENQG------AKCVFLEG 295
>gb|AAO22913.1| YgbF-like protein [Myxococcus xanthus]
Length = 286
Score = 32.3 bits (72), Expect = 8.3
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 11/87 (12%)
Frame = +3
Query: 534 QGISSDPFPVCVEFSGNPNIHEVKRWGLLTNWPHH-----LPAVVRVLCSEDSDLEV--- 689
+G S+ P PV VE S ++ ++ P H LP V V+ +D +E+
Sbjct: 70 EGPSARPIPVKVEASAQESLGATPELAVVKLKPRHEPAPKLPTAVAVMEPDDEQMEMFIS 129
Query: 690 ---NEGKGRDSGAASVANSSFAGECAG 761
+EG + AAS A + E AG
Sbjct: 130 PAPDEGSAVSASAASAATMVASNEDAG 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 692,797,607
Number of Sequences: 1393205
Number of extensions: 15727611
Number of successful extensions: 39756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39665
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
