Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001530A_C01 KMC001530A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566649.1| expressed protein; protein id: At3g19810.1, sup... 169 1e-41
emb|CAA06176.1| hypothetical protein [Thermoanaerobacterium ther... 58 6e-08
ref|NP_695497.1| conserved hypothetical protein with duf177 [Bif... 48 8e-05
ref|ZP_00121071.1| hypothetical protein [Bifidobacterium longum ... 48 8e-05
ref|NP_348370.1| Predicted Zn-finger-like protein, possible nucl... 47 1e-04
>ref|NP_566649.1| expressed protein; protein id: At3g19810.1, supported by cDNA:
42922. [Arabidopsis thaliana]
gi|11994192|dbj|BAB01295.1|
emb|CAA06176.1~gene_id:MPN9.5~similar to unknown protein
[Arabidopsis thaliana] gi|21593774|gb|AAM65741.1|
unknown [Arabidopsis thaliana]
Length = 321
Score = 169 bits (429), Expect = 1e-41
Identities = 82/138 (59%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Frame = -2
Query: 522 IGLLCNRCCMPSAESVFSEFSLLLSEEPIVEPETIDLGVIFGEDKITTSGDRGLDDDDAL 343
I L CNRC + ES+FS FSLLL+EEP+ EP+ IDLG FG DK G+ D+DD+
Sbjct: 179 ITLGCNRCGESTGESIFSNFSLLLTEEPVEEPDVIDLGFTFGNDK--EEGEDDDDNDDSW 236
Query: 342 IDLDDQLYFPPEEKHIDISKNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNCNCS- 166
ID +D+L+FPPE K IDISK+IRD VHLEIT+ ++CD CKGMCLKCG N N C+C
Sbjct: 237 IDWEDKLHFPPEVKEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGR 296
Query: 165 QVKEKSYGPLGNLKEKMQ 112
+ K+K YGPLGNL+E+MQ
Sbjct: 297 EEKDKGYGPLGNLREQMQ 314
>emb|CAA06176.1| hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]
Length = 228
Score = 58.2 bits (139), Expect = 6e-08
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = -2
Query: 354 DDALIDLDDQLYFPPEEKHIDISKNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNC 175
D+ L + D+ + E+ +D++K + + V L + M VC P CKG+C CG+N N C
Sbjct: 83 DEILNEADEDYSYEVEDDKLDLTKIVIENVELSLPMKFVCSPDCKGLCPICGKNLNHEKC 142
Query: 174 NCSQVKE 154
+C Q+KE
Sbjct: 143 DC-QIKE 148
>ref|NP_695497.1| conserved hypothetical protein with duf177 [Bifidobacterium longum
NCC2705] gi|23325485|gb|AAN24133.1|AE014648_3 conserved
hypothetical protein with duf177 [Bifidobacterium longum
NCC2705]
Length = 159
Score = 47.8 bits (112), Expect = 8e-05
Identities = 31/120 (25%), Positives = 53/120 (43%), Gaps = 9/120 (7%)
Frame = -2
Query: 444 EPIVEPETIDLGVIF----GEDKITTSGDRGLDDDDALI-----DLDDQLYFPPEEKHID 292
+PI E +D+ V F G+DK G + DD+ I + +D D
Sbjct: 31 KPIDEDWPVDVTVFFPYESGQDKANGKGGKSKKDDEIDIIAGEDESEDTYPLLENGAFAD 90
Query: 291 ISKNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNCNCSQVKEKSYGPLGNLKEKMQ 112
I IRD + + + +C P C+G+C +CG + N + V + + L LK +++
Sbjct: 91 IEAMIRDTLVESLPLQPLCRPDCRGLCSQCGADLNEDPDHHHDVTDIRFAGLAGLKAQLE 150
>ref|ZP_00121071.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 209
Score = 47.8 bits (112), Expect = 8e-05
Identities = 31/120 (25%), Positives = 53/120 (43%), Gaps = 9/120 (7%)
Frame = -2
Query: 444 EPIVEPETIDLGVIF----GEDKITTSGDRGLDDDDALI-----DLDDQLYFPPEEKHID 292
+PI E +D+ V F G+DK G + DD+ I + +D D
Sbjct: 81 KPIDEDWPVDVTVFFPYESGQDKANGKGGKSKKDDEIDIIAGEDESEDTYPLLENGAFAD 140
Query: 291 ISKNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNCNCSQVKEKSYGPLGNLKEKMQ 112
I IRD + + + +C P C+G+C +CG + N + V + + L LK +++
Sbjct: 141 IEAMIRDTLVESLPLQPLCRPDCRGLCSQCGADLNEDPDHHHDVTDIRFAGLAGLKAQLE 200
>ref|NP_348370.1| Predicted Zn-finger-like protein, possible nucleic acid binding
[Clostridium acetobutylicum] gi|25497483|pir||C97115
probable Zn-finger-like protein, probable nucleic acid
binding [imported] - Clostridium acetobutylicum
gi|15024712|gb|AAK79710.1|AE007683_9 Predicted
Zn-finger-like protein, possible nucleic acid binding
[Clostridium acetobutylicum]
Length = 140
Score = 47.0 bits (110), Expect = 1e-04
Identities = 20/73 (27%), Positives = 36/73 (48%), Gaps = 10/73 (13%)
Frame = -2
Query: 351 DALIDLDDQLYFPPEEK----------HIDISKNIRDRVHLEITMNSVCDPGCKGMCLKC 202
D +++D++ PE K +DI++ + + + L + + +C CKG+C C
Sbjct: 51 DIDLEIDEKFTDNPENKDDEVIFINNYEVDINEIVENNIILSLPIKKLCREDCKGLCPMC 110
Query: 201 GQNFNTGNCNCSQ 163
G N N CNC +
Sbjct: 111 GTNLNISTCNCHE 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,071,424
Number of Sequences: 1393205
Number of extensions: 10158514
Number of successful extensions: 38074
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 33561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37116
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
