Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001524A_C01 KMC001524A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79435.1|AC025808_17 F18O14.34 [Arabidopsis thaliana] 97 2e-19
gb|AAM61583.1| unknown [Arabidopsis thaliana] 97 2e-19
ref|NP_564091.1| expressed protein; protein id: At1g19580.1, sup... 97 2e-19
dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa... 89 7e-17
gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis ... 80 2e-14
>gb|AAF79435.1|AC025808_17 F18O14.34 [Arabidopsis thaliana]
Length = 298
Score = 97.1 bits (240), Expect = 2e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = -1
Query: 683 TEDEMTFFSQSAINYSNLAQAHAAENAKELEEAEFVKVLHKKSVRPGDEYASALGVVRET 504
T++E+ F SQSA NYSNLAQAHAAENAK L EF KVL KK +EY S LG+VRET
Sbjct: 216 TDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDEEYDSMLGIVRET 275
Query: 503 SPELNLPDNVVLDKVPK 453
PELNLP+N++ DK K
Sbjct: 276 PPELNLPNNILPDKETK 292
>gb|AAM61583.1| unknown [Arabidopsis thaliana]
Length = 275
Score = 97.1 bits (240), Expect = 2e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = -1
Query: 683 TEDEMTFFSQSAINYSNLAQAHAAENAKELEEAEFVKVLHKKSVRPGDEYASALGVVRET 504
T++E+ F SQSA NYSNLAQAHAAENAK L EF KVL KK +EY S LG+VRET
Sbjct: 193 TDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDEEYDSMLGIVRET 252
Query: 503 SPELNLPDNVVLDKVPK 453
PELNLP+N++ DK K
Sbjct: 253 PPELNLPNNILPDKETK 269
>ref|NP_564091.1| expressed protein; protein id: At1g19580.1, supported by cDNA:
12477. [Arabidopsis thaliana] gi|25518562|pir||E86328
hypothetical protein F14P1.8 - Arabidopsis thaliana
gi|9795586|gb|AAF98404.1|AC024609_5 Unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 97.1 bits (240), Expect = 2e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = -1
Query: 683 TEDEMTFFSQSAINYSNLAQAHAAENAKELEEAEFVKVLHKKSVRPGDEYASALGVVRET 504
T++E+ F SQSA NYSNLAQAHAAENAK L EF KVL KK +EY S LG+VRET
Sbjct: 193 TDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDEEYDSMLGIVRET 252
Query: 503 SPELNLPDNVVLDKVPK 453
PELNLP+N++ DK K
Sbjct: 253 PPELNLPNNILPDKETK 269
>dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa (japonica
cultivar-group)] gi|23495721|dbj|BAC19933.1| putative
transcription factor APFI [Oryza sativa (japonica
cultivar-group)]
Length = 273
Score = 88.6 bits (218), Expect = 7e-17
Identities = 45/78 (57%), Positives = 54/78 (68%)
Frame = -1
Query: 683 TEDEMTFFSQSAINYSNLAQAHAAENAKELEEAEFVKVLHKKSVRPGDEYASALGVVRET 504
TE+EM F +QSA NY NLAQ HAAENAK +E E K+L KK +EY S LGVVRE
Sbjct: 193 TEEEMAFIAQSATNYINLAQVHAAENAKTFDEIELEKMLRKKFAHKDEEYDSMLGVVREI 252
Query: 503 SPELNLPDNVVLDKVPKA 450
PEL LPD+++ +K KA
Sbjct: 253 PPELILPDSILPNKAQKA 270
>gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis thaliana]
Length = 278
Score = 80.5 bits (197), Expect = 2e-14
Identities = 40/78 (51%), Positives = 52/78 (66%)
Frame = -1
Query: 683 TEDEMTFFSQSAINYSNLAQAHAAENAKELEEAEFVKVLHKKSVRPGDEYASALGVVRET 504
T++E+ + SQSA NY NLAQ HA+EN+K E+ E + L KK R ++Y S LG+ RET
Sbjct: 193 TDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDEDYDSMLGITRET 252
Query: 503 SPELNLPDNVVLDKVPKA 450
PEL LPDNV+ P A
Sbjct: 253 PPELILPDNVLPGGKPVA 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,910,050
Number of Sequences: 1393205
Number of extensions: 13530546
Number of successful extensions: 36917
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 34998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36881
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
