Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001521A_C01 KMC001521A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA50785.1| cshA minor pilin [Escherichia coli] 33 2.5
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFE... 31 7.4
pir||B64710 site-specific DNA-methyltransferase (EC 2.1.1.-) HP1... 31 9.6
>emb|CAA50785.1| cshA minor pilin [Escherichia coli]
Length = 190
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/48 (33%), Positives = 24/48 (49%)
Frame = +1
Query: 313 CHTILSTETSISNMNKLIFRQNQF*NPEATHISFFP*LILASGSNVEG 456
CH ++ TE S+ N +LIF + P + F + SGS V+G
Sbjct: 45 CHVVVDTENSVGNSGRLIFGTYRKSMPSSVPSQDFTVRLFESGSTVQG 92
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99] gi|7465426|pir||F71810 type III DNA
modification enzyme (methyltransferase) - Helicobacter
pylori (strain J99) gi|4156030|gb|AAD06989.1| TYPE III
DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 641
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +3
Query: 315 PHNPKHGNFNF*HE*AYFSSESILKSRSYSHKLLPIINSGFGIKC 449
P+N K+ NF + + + S+E +LK+ YS + L I + FG KC
Sbjct: 120 PYNTKNDNFIYGDDFSQ-SNEEVLKTLDYSKEKLDYIKNLFGSKC 163
>pir||B64710 site-specific DNA-methyltransferase (EC 2.1.1.-) HP1522 -
Helicobacter pylori (strain 26695)
Length = 627
Score = 30.8 bits (68), Expect = 9.6
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +3
Query: 315 PHNPKHGNFNF*HE*AYFSSESILKSRSYSHKLLPIINSGFGIKC 449
P+N K+ NF + + + S+E +LK+ YS + L I + FG KC
Sbjct: 120 PYNTKNENFIYGDDFSQ-SNEEVLKTLDYSKEKLDYIKNLFGSKC 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,935,443
Number of Sequences: 1393205
Number of extensions: 8914895
Number of successful extensions: 18735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18734
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
