Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001520A_C01 KMC001520A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 39 0.036
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 35 0.69
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 35 0.69
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 33 1.5
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 33 2.0
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 38.9 bits (89), Expect = 0.036
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -3
Query: 479 TLVILKNCL---CACHEFQVTVWQMEKFGVRESWTQLLKITNIHLNAVPLCMSENDVVLL 309
TL L+ CL C C VW M++FG SW++LL I + PL +S+ VVLL
Sbjct: 262 TLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTDFVRPLWISDGLVVLL 321
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 34.7 bits (78), Expect = 0.69
Identities = 13/47 (27%), Positives = 30/47 (63%)
Frame = -3
Query: 449 ACHEFQVTVWQMEKFGVRESWTQLLKITNIHLNAVPLCMSENDVVLL 309
+C++ +W M ++G +SW++ ++I ++ + PLC ++ND +L
Sbjct: 332 SCYDVHDDIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEEVL 377
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 34.7 bits (78), Expect = 0.69
Identities = 13/47 (27%), Positives = 30/47 (63%)
Frame = -3
Query: 449 ACHEFQVTVWQMEKFGVRESWTQLLKITNIHLNAVPLCMSENDVVLL 309
+C++ +W M ++G +SW++ ++I ++ + PLC ++ND +L
Sbjct: 321 SCYDVHDDIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDEEVL 366
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 33.5 bits (75), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 470 ILKNCLCACHEFQ---VTVWQMEKFGVRESWTQLLKI 369
+L CLC + V VW M+++ VR+SWT++ +
Sbjct: 267 VLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -3
Query: 476 LVILKNCLCAC---HEFQVTVWQMEKFGVRESW 387
LV LK CLCA + ++ +W M+ +GV+ESW
Sbjct: 290 LVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESW 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,321,936
Number of Sequences: 1393205
Number of extensions: 9327056
Number of successful extensions: 19601
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19599
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
