Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001517A_C01 KMC001517A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN84563.1| glutamine synthetase [Lotus japonicus] 233 2e-61
gb|AAL67439.1| glutamine synthetase precursor [Lotus japonicus] 233 2e-61
gb|AAF17703.1|AF031082_1 glutamine synthetase [Canavalia lineata] 227 7e-59
gb|AAD49734.1|AF169795_1 glutamine synthetase precursor [Juglans... 219 2e-56
gb|AAO37651.1| glutamine synthetase [Medicago truncatula] 218 3e-56
>gb|AAN84563.1| glutamine synthetase [Lotus japonicus]
Length = 430
Score = 233 bits (595), Expect(2) = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = -2
Query: 660 AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG 481
AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG
Sbjct: 306 AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG 365
Query: 480 VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 322
VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA
Sbjct: 366 VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 418
Score = 25.0 bits (53), Expect(2) = 2e-61
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3
Query: 320 EALAAQKIQLKV 285
EALAAQKIQLKV
Sbjct: 419 EALAAQKIQLKV 430
>gb|AAL67439.1| glutamine synthetase precursor [Lotus japonicus]
Length = 430
Score = 233 bits (595), Expect(2) = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = -2
Query: 660 AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG 481
AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG
Sbjct: 306 AHTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWG 365
Query: 480 VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 322
VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA
Sbjct: 366 VANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 418
Score = 25.0 bits (53), Expect(2) = 2e-61
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3
Query: 320 EALAAQKIQLKV 285
EALAAQKIQLKV
Sbjct: 419 EALAAQKIQLKV 430
>gb|AAF17703.1|AF031082_1 glutamine synthetase [Canavalia lineata]
Length = 430
Score = 227 bits (578), Expect(2) = 7e-59
Identities = 109/112 (97%), Positives = 110/112 (97%)
Frame = -2
Query: 657 HTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWGV 478
HTNYSTKSMREEGGFEVIKKAILNLSLRH DHIRAYGEGNERRLTGKHETADINTFSWGV
Sbjct: 307 HTNYSTKSMREEGGFEVIKKAILNLSLRHSDHIRAYGEGNERRLTGKHETADINTFSWGV 366
Query: 477 ANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 322
ANRGCSIRVGRDTEK GKGYLEDRRPASNMDPYVVT+LLAETTLLWEPTLEA
Sbjct: 367 ANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAETTLLWEPTLEA 418
Score = 22.7 bits (47), Expect(2) = 7e-59
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3
Query: 320 EALAAQKIQLKV 285
EALAAQKI LKV
Sbjct: 419 EALAAQKIALKV 430
>gb|AAD49734.1|AF169795_1 glutamine synthetase precursor [Juglans nigra]
Length = 432
Score = 219 bits (559), Expect = 2e-56
Identities = 103/112 (91%), Positives = 110/112 (97%)
Frame = -2
Query: 657 HTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWGV 478
HTNYSTKSMRE+GGFEVIKKAILNLSLRH+DHI AYGEGNERRLTGKHETA INTFSWGV
Sbjct: 309 HTNYSTKSMREDGGFEVIKKAILNLSLRHKDHISAYGEGNERRLTGKHETASINTFSWGV 368
Query: 477 ANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 322
ANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VT+LLAETT+LWEPTLEA
Sbjct: 369 ANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYIVTSLLAETTILWEPTLEA 420
>gb|AAO37651.1| glutamine synthetase [Medicago truncatula]
Length = 428
Score = 218 bits (555), Expect(2) = 3e-56
Identities = 105/112 (93%), Positives = 108/112 (95%)
Frame = -2
Query: 657 HTNYSTKSMREEGGFEVIKKAILNLSLRHQDHIRAYGEGNERRLTGKHETADINTFSWGV 478
HTNYSTKSMRE+GGFEVIKKAILNLSLRH+ HI AYGEGNERRLTGKHETA INTFSWGV
Sbjct: 305 HTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINTFSWGV 364
Query: 477 ANRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTALLAETTLLWEPTLEA 322
ANRGCSIRVGRDTEK GKGYLEDRRPASNMDPYVVTALLAE+TLLWEPTLEA
Sbjct: 365 ANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEA 416
Score = 22.7 bits (47), Expect(2) = 3e-56
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3
Query: 320 EALAAQKIQLKV 285
EALAAQKI LKV
Sbjct: 417 EALAAQKIALKV 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,283,924
Number of Sequences: 1393205
Number of extensions: 13130387
Number of successful extensions: 32251
Number of sequences better than 10.0: 362
Number of HSP's better than 10.0 without gapping: 30501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32099
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
