Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001514A_C01 KMC001514A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [... 73 3e-12
ref|NP_194330.1| KH domain protein; protein id: At4g26000.1, sup... 40 0.022
ref|NP_524390.2| Ecdysone-dependent gene 91 CG7539-PA gi|1738041... 35 0.94
pir||C49773 ecdysone-dependent cytokeratin-like protein EDG-91 -... 35 0.94
ref|NP_000413.1| keratin 17 [Homo sapiens] gi|547751|sp|Q04695|K... 34 1.6
>gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa]
Length = 458
Score = 72.8 bits (177), Expect = 3e-12
Identities = 42/72 (58%), Positives = 49/72 (67%), Gaps = 3/72 (4%)
Frame = -2
Query: 592 VQIAQQLIQDVITHHQEPVASSYSRLDAGLRSSYSQLGSSSYPSSSLP---SQPYNGYGS 422
VQ A QLIQD + H++ V SSY+ LD R SYSQ GSS+YPSSSLP S GY S
Sbjct: 387 VQAAYQLIQDSLAAHRDSVRSSYAGLDPVYRPSYSQYGSSTYPSSSLPSYSSMDGGGYSS 446
Query: 421 SGLGGGYSSTFR 386
SGL GGY S++R
Sbjct: 447 SGL-GGYGSSYR 457
>ref|NP_194330.1| KH domain protein; protein id: At4g26000.1, supported by cDNA:
33495., supported by cDNA: gi_15810498, supported by
cDNA: gi_20466385, supported by cDNA: gi_21280914
[Arabidopsis thaliana] gi|7485827|pir||T04255
hypothetical protein F20B18.110 - Arabidopsis thaliana
gi|4538929|emb|CAB39665.1| putative nucleic acid binding
protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding
protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding
protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding
protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding
protein [Arabidopsis thaliana]
Length = 495
Score = 40.0 bits (92), Expect = 0.022
Identities = 32/97 (32%), Positives = 45/97 (45%), Gaps = 31/97 (31%)
Frame = -2
Query: 592 VQIAQQLIQDVITHHQEPVASS--YSRLDAGL---------------------------- 503
VQ A+QLIQ+ I +H+EPV+ S Y+R+D+G
Sbjct: 396 VQTAEQLIQEFIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYR 455
Query: 502 RSSYSQLGSSSYPSSSLPSQPYNG-YGSSGLGGGYSS 395
++YSQLG S + +L Q Y Y + GGYSS
Sbjct: 456 PTAYSQLGGPSTYTPTLTGQTYGSEYRPASDVGGYSS 492
>ref|NP_524390.2| Ecdysone-dependent gene 91 CG7539-PA
gi|17380419|sp|P27781|CUP9_DROME Pupal cuticle protein
Edg-91 precursor (Ecdysone-dependent protein 91)
gi|7300278|gb|AAF55440.1| CG7539-PA [Drosophila
melanogaster]
Length = 159
Score = 34.7 bits (78), Expect = 0.94
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Frame = -2
Query: 493 YSQLGSSSYPSSSLPSQP---------YNGYGSSGLGGGY 401
YS G YP P YNGYG SG GGGY
Sbjct: 55 YSGFGGGGYPGGYASGYPGGYGGGYSGYNGYGGSGFGGGY 94
>pir||C49773 ecdysone-dependent cytokeratin-like protein EDG-91 - fruit fly
(Drosophila melanogaster) gi|157327|gb|AAA28502.1|
cuticle protein gi|157329|gb|AAA28503.1| cuticle protein
Length = 159
Score = 34.7 bits (78), Expect = 0.94
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Frame = -2
Query: 493 YSQLGSSSYPSSSLPSQP---------YNGYGSSGLGGGY 401
YS G YP P YNGYG SG GGGY
Sbjct: 55 YSGFGGGGYPGGYASGYPGGYGGGYSGYNGYGGSGFGGGY 94
>ref|NP_000413.1| keratin 17 [Homo sapiens] gi|547751|sp|Q04695|K1CQ_HUMAN Keratin,
type I cytoskeletal 17 (Cytokeratin 17) (K17) (CK 17)
(39.1) gi|422802|pir||S30433 keratin 17, type I,
cytoskeletal - human gi|30379|emb|CAA79626.1|
cytokeratin 17 [Homo sapiens] gi|34075|emb|CAA44451.1|
keratin related product [Homo sapiens]
gi|14198021|gb|AAH00159.2|AAH00159 keratin 17 [Homo
sapiens] gi|15080273|gb|AAH11901.1|AAH11901 Similar to
keratin 17 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 1.6
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = -2
Query: 520 RLDAGLRSSYSQLGSSSYPSSSLPSQPYNGYGSSGLGGGYSSTF 389
RL GL + +LGS+ S+L Y+ S G GGGY S+F
Sbjct: 30 RLSGGLGAGSCRLGSAGGLGSTLGGSSYSSCYSFGSGGGYGSSF 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,855,823
Number of Sequences: 1393205
Number of extensions: 9467461
Number of successful extensions: 24684
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 21909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24271
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
