Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001513A_C01 KMC001513A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05187 chitinase (EC 3.2.1.14) class III, acidic - soybean ... 93 2e-18
gb|AAN10048.1| high molecular weight root vegetative storage pro... 89 4e-17
pir||S57992 chitinase homolog - Sesbania rostrata (fragment) 88 8e-17
emb|CAA88593.1| chitinase homologue [Sesbania rostrata] 88 8e-17
pir||JG0178 chitinase (EC 3.2.1.14) Chib1 - soybean gi|4835582|d... 77 1e-13
>pir||T05187 chitinase (EC 3.2.1.14) class III, acidic - soybean
gi|2934696|dbj|BAA25015.1| class III acidic
endochitinase [Glycine max]
Length = 333
Score = 93.2 bits (230), Expect = 2e-18
Identities = 43/64 (67%), Positives = 51/64 (79%)
Frame = -2
Query: 566 ASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNYSNQFKDLVPKSVL 387
AS AAPSGGYIPPQ LIS+VLPY+K NYGG+MLWDR++DV N +S+Q KD VPK +
Sbjct: 247 ASPDAAPSGGYIPPQVLISEVLPYVKQASNYGGVMLWDRYHDVLNYHSDQIKDYVPKYAM 306
Query: 386 GFVT 375
FVT
Sbjct: 307 RFVT 310
>gb|AAN10048.1| high molecular weight root vegetative storage protein precursor
[Medicago sativa]
Length = 328
Score = 89.0 bits (219), Expect = 4e-17
Identities = 46/68 (67%), Positives = 51/68 (74%), Gaps = 4/68 (5%)
Frame = -2
Query: 566 ASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNN----YSNQFKDLVP 399
A+ AAPSGGYIPP DLISKV P IKPT NYGGIMLWDRF+DV N YS+Q K+ V
Sbjct: 241 AAPNAAPSGGYIPPDDLISKVPPSIKPTSNYGGIMLWDRFHDVTGNNDYIYSDQIKEHVK 300
Query: 398 KSVLGFVT 375
+SVL F T
Sbjct: 301 RSVLRFKT 308
>pir||S57992 chitinase homolog - Sesbania rostrata (fragment)
Length = 119
Score = 87.8 bits (216), Expect = 8e-17
Identities = 46/79 (58%), Positives = 55/79 (69%)
Frame = -2
Query: 566 ASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNYSNQFKDLVPKSVL 387
AS AAPSGGYIPP LIS+VLPYIK NYGGIMLW RF DV N+YS+Q K V K +L
Sbjct: 34 ASREAAPSGGYIPPNVLISEVLPYIKQASNYGGIMLWSRFQDVTNHYSDQIKYYVTKYML 93
Query: 386 GFVTGGFAMPVSELVAGSL 330
FV + +S+ V+ +L
Sbjct: 94 RFVK-AVSNAISDCVSAAL 111
>emb|CAA88593.1| chitinase homologue [Sesbania rostrata]
Length = 328
Score = 87.8 bits (216), Expect = 8e-17
Identities = 46/79 (58%), Positives = 55/79 (69%)
Frame = -2
Query: 566 ASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNYSNQFKDLVPKSVL 387
AS AAPSGGYIPP LIS+VLPYIK NYGGIMLW RF DV N+YS+Q K V K +L
Sbjct: 243 ASREAAPSGGYIPPNVLISEVLPYIKQASNYGGIMLWSRFQDVTNHYSDQIKYYVTKYML 302
Query: 386 GFVTGGFAMPVSELVAGSL 330
FV + +S+ V+ +L
Sbjct: 303 RFVK-AVSNAISDCVSAAL 320
>pir||JG0178 chitinase (EC 3.2.1.14) Chib1 - soybean gi|4835582|dbj|BAA77675.1|
Chitinase III-A [Glycine max] gi|4835586|dbj|BAA77677.1|
acidic chitinase [Glycine max]
Length = 299
Score = 77.4 bits (189), Expect = 1e-13
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = -2
Query: 566 ASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNYSN 420
AS AAAPSGG++P L S++LP IK + NYGG+MLWDRFNDVQN YSN
Sbjct: 244 ASEAAAPSGGFVPADVLTSQILPVIKQSSNYGGVMLWDRFNDVQNGYSN 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,853,909
Number of Sequences: 1393205
Number of extensions: 10772721
Number of successful extensions: 24695
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 24072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24686
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
