Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001509A_C01 KMC001509A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis ... 110 8e-24
ref|NP_565200.1| expressed protein; protein id: At1g79110.1, sup... 110 8e-24
ref|NP_566438.1| expressed protein; protein id: At3g12920.1, sup... 110 8e-24
pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thali... 110 8e-24
gb|AAM67026.1| unknown [Arabidopsis thaliana] 106 2e-22
>gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis thaliana]
Length = 358
Score = 110 bits (275), Expect = 8e-24
Identities = 54/87 (62%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
Frame = -2
Query: 441 DDAESCCGST--DGDDEGWRTLAGECAGVKDKDSGSR--LCRNCGKDESCVLILPCRHLC 274
DDAESCCGS+ G +E R G +DK R +CRNCG++ESCVL+LPCRHLC
Sbjct: 270 DDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLC 329
Query: 273 LCTVCGSTLHTCPICKSFKTASVHVNM 193
LC VCGS++HTCPIC S K ASVHVNM
Sbjct: 330 LCGVCGSSVHTCPICTSPKNASVHVNM 356
>ref|NP_565200.1| expressed protein; protein id: At1g79110.1, supported by cDNA:
36412. [Arabidopsis thaliana]
Length = 358
Score = 110 bits (275), Expect = 8e-24
Identities = 54/87 (62%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
Frame = -2
Query: 441 DDAESCCGST--DGDDEGWRTLAGECAGVKDKDSGSR--LCRNCGKDESCVLILPCRHLC 274
DDAESCCGS+ G +E R G +DK R +CRNCG++ESCVL+LPCRHLC
Sbjct: 270 DDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLC 329
Query: 273 LCTVCGSTLHTCPICKSFKTASVHVNM 193
LC VCGS++HTCPIC S K ASVHVNM
Sbjct: 330 LCGVCGSSVHTCPICTSPKNASVHVNM 356
>ref|NP_566438.1| expressed protein; protein id: At3g12920.1, supported by cDNA: 924.
[Arabidopsis thaliana] gi|15795121|dbj|BAB02499.1|
gene_id:MGH6.3~unknown protein [Arabidopsis thaliana]
gi|26451940|dbj|BAC43062.1| unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 110 bits (275), Expect = 8e-24
Identities = 52/89 (58%), Positives = 67/89 (74%), Gaps = 4/89 (4%)
Frame = -2
Query: 447 MVDDAESCCGSTD---GDDEGWRTLAGECAGVKDKDS-GSRLCRNCGKDESCVLILPCRH 280
+ DDA+SCCGS D ++E W+ LAGE K G +CR+CGK E+ VL+LPCRH
Sbjct: 246 VADDAQSCCGSNDEGDSEEERWK-LAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRH 304
Query: 279 LCLCTVCGSTLHTCPICKSFKTASVHVNM 193
+CLC+VCGS+L+TCPICKS KTAS+HVN+
Sbjct: 305 MCLCSVCGSSLNTCPICKSPKTASLHVNL 333
>pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thaliana
gi|3152583|gb|AAC17064.1| Contains similarity to
inhibitor of apoptosis protein gb|U45881 from D.
melanogaster. [Arabidopsis thaliana]
Length = 347
Score = 110 bits (275), Expect = 8e-24
Identities = 54/87 (62%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
Frame = -2
Query: 441 DDAESCCGST--DGDDEGWRTLAGECAGVKDKDSGSR--LCRNCGKDESCVLILPCRHLC 274
DDAESCCGS+ G +E R G +DK R +CRNCG++ESCVL+LPCRHLC
Sbjct: 259 DDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLC 318
Query: 273 LCTVCGSTLHTCPICKSFKTASVHVNM 193
LC VCGS++HTCPIC S K ASVHVNM
Sbjct: 319 LCGVCGSSVHTCPICTSPKNASVHVNM 345
>gb|AAM67026.1| unknown [Arabidopsis thaliana]
Length = 335
Score = 106 bits (264), Expect = 2e-22
Identities = 51/89 (57%), Positives = 66/89 (73%), Gaps = 4/89 (4%)
Frame = -2
Query: 447 MVDDAESCCGSTD---GDDEGWRTLAGECAGVKDKDS-GSRLCRNCGKDESCVLILPCRH 280
+ DDA+SC GS D ++E W+ LAGE K G +CR+CGK E+ VL+LPCRH
Sbjct: 246 VADDAQSCYGSNDEGDSEEERWK-LAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRH 304
Query: 279 LCLCTVCGSTLHTCPICKSFKTASVHVNM 193
+CLC+VCGS+L+TCPICKS KTAS+HVN+
Sbjct: 305 MCLCSVCGSSLNTCPICKSPKTASLHVNL 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,165,919
Number of Sequences: 1393205
Number of extensions: 10708325
Number of successful extensions: 47492
Number of sequences better than 10.0: 530
Number of HSP's better than 10.0 without gapping: 39804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46134
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
