Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001508A_C01 KMC001508A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00009787.1| hypothetical protein [Rhodopseudomonas palustris] 33 1.7
ref|ZP_00117032.1| hypothetical protein [Cytophaga hutchinsonii] 32 3.8
gb|AAH21339.1| acyl-Coenzyme A oxidase 2, branched chain [Mus mu... 32 5.0
ref|NP_444345.1| acyl-Coenzyme A oxidase 2, branched chain [Mus ... 32 5.0
ref|NP_671910.1| similar to putative aldehyde oxidase; protein i... 32 6.5
>gb|ZP_00009787.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 181
Score = 33.5 bits (75), Expect = 1.7
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = +1
Query: 403 VTFPNMVTIVWFQNMLKVSLDMVGYAHAVVPP--RQVRIQLAEKL*GD 540
VT P ++ + WF + +++ AHA+V P Q+R +LAE L GD
Sbjct: 111 VTKPKLLQLRWFAATYRWVIELRAKAHAIVAPIMAQIRAKLAELLKGD 158
>ref|ZP_00117032.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 409
Score = 32.3 bits (72), Expect = 3.8
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = -3
Query: 528 FLSKLNSYLPWGNNCMSITHHVQAHFEHILKPYYSYHIGKSHPLFLI 388
FL KLN L WG I HH +A E++ KPY KS L+++
Sbjct: 121 FLWKLNKPLVWG----PIGHHPKAPSEYVYKPYGRIEYLKSRILWVV 163
>gb|AAH21339.1| acyl-Coenzyme A oxidase 2, branched chain [Mus musculus]
Length = 681
Score = 32.0 bits (71), Expect = 5.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 NGGGIHQIQMRSTKCNLVIMSFNQ*EKVGDFSQYG-NYSMVSEYAQSELGHG 470
N +H I M + I S E++ + Q G N+ +++ YAQ+ELGHG
Sbjct: 114 NNLNLHGIAMNA------IRSLGSDEQIAKWGQLGKNFQIITTYAQTELGHG 159
>ref|NP_444345.1| acyl-Coenzyme A oxidase 2, branched chain [Mus musculus]
gi|17367045|sp|Q9QXD1|CAO2_MOUSE Acyl-coenzyme A oxidase
2, peroxisomal (Branched-chain acyl-CoA oxidase)
(BRCACox) (Trihydroxycoprostanoyl-CoA oxidase) (THCCox)
(THCA-CoA oxidase) gi|6688740|emb|CAB65251.1| branched
chain acyl-CoA oxidase; trihydroxycoprostanoyl-CoA
oxidase [Mus musculus]
Length = 681
Score = 32.0 bits (71), Expect = 5.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 NGGGIHQIQMRSTKCNLVIMSFNQ*EKVGDFSQYG-NYSMVSEYAQSELGHG 470
N +H I M + I S E++ + Q G N+ +++ YAQ+ELGHG
Sbjct: 114 NNLNLHGIAMNA------IRSLGSDEQIAKWGQLGKNFQIITTYAQTELGHG 159
>ref|NP_671910.1| similar to putative aldehyde oxidase; protein id: At2g32295.1
[Arabidopsis thaliana]
Length = 424
Score = 31.6 bits (70), Expect = 6.5
Identities = 26/82 (31%), Positives = 37/82 (44%)
Frame = +1
Query: 118 NLGKYYTHITYA*SGLKRKILAKLQIYKRGQDTYGYQMQTLWIL*GTSNTFSDTFFY*CE 297
N GKY T + L+ L+ Y DT+ Y +Q WIL G +NTF F+
Sbjct: 253 NAGKYLTAVPVI-------FLSALKYYI-DPDTWTYSIQPAWILSGLANTFFSFFWDIL- 303
Query: 298 IHGESHEMEVGSTKFK*DRPNV 363
++ V + FK RPN+
Sbjct: 304 ---RDWDLSVFTRIFKFTRPNL 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,847,240
Number of Sequences: 1393205
Number of extensions: 11052286
Number of successful extensions: 19359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19353
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
