Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001504A_C01 KMC001504A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_116579.1| ExtraCellular Mutant; Ecm17p [Saccharomyces cer... 32 4.0
gb|AAK96839.1| periaxin-like protein [Arabidopsis thaliana] 32 4.0
ref|NP_784449.1| prophage Lp1 protein 65 [Lactobacillus plantaru... 32 5.2
ref|NP_196515.1| surface protein PspC-related; protein id: At5g0... 32 5.2
>ref|NP_116579.1| ExtraCellular Mutant; Ecm17p [Saccharomyces cerevisiae]
gi|1352934|sp|P47169|YJ9F_YEAST Hypothetical 161.2 kDa
protein in NMD5-HOM6 intergenic region
gi|1078403|pir||S57160 sulfite reductase homolog YJR137c
- yeast (Saccharomyces cerevisiae)
gi|1015876|emb|CAA89669.1| ORF YJR137c [Saccharomyces
cerevisiae]
Length = 1442
Score = 32.3 bits (72), Expect = 4.0
Identities = 22/92 (23%), Positives = 42/92 (44%), Gaps = 12/92 (13%)
Frame = -1
Query: 540 TGINNIIKFIETGKIEEMPEL------------LLEEQPEQLKLPGKPRNLLTYPGTPNL 397
TG+N+ FIE G++E+ P+L +L+ +L G +++ ++
Sbjct: 1214 TGLNHFTAFIENGRVEDTPDLPQKTGIRKVAEYMLKTNSGHFRLTGNQHLVISNITDEHV 1273
Query: 396 EGLKDLAKSLQNPKLEKHQGPLFRTTSTRC*G 301
G+K + K+ KL+ R +S+ C G
Sbjct: 1274 AGIKSILKTY---KLDNTDFSGLRLSSSSCVG 1302
>gb|AAK96839.1| periaxin-like protein [Arabidopsis thaliana]
Length = 370
Score = 32.3 bits (72), Expect = 4.0
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = -1
Query: 519 KFIETGKIEEMPELLLEEQPEQLKLPGKPR-NLLTYPGTPNLEGLKDLAKSLQNPKLEK 346
KF E K E+P+L+ E+PE K+P P+ L P P LE K +Q P+L K
Sbjct: 168 KFPENSK-SEVPKLMETEKPEAPKVPEIPKPELPKLPEVPKLEAPK--VPEIQKPELPK 223
>ref|NP_784449.1| prophage Lp1 protein 65 [Lactobacillus plantarum WCFS1]
gi|28270389|emb|CAD63292.1| prophage Lp1 protein 65
[Lactobacillus plantarum WCFS1]
Length = 325
Score = 32.0 bits (71), Expect = 5.2
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Frame = -1
Query: 549 YANTGINNIIKFIETG-KIEEMPELLLEEQPEQLKLPGKPRNLLTYPGTPNLEGLKDLAK 373
Y TG NN IK + TG + PE+ E L P+N + Y TP +G + LA+
Sbjct: 226 YQLTGQNNNIKNLMTGTRSLNDPEMTTYENQVAAYLKESPKNYVRYQVTPIFKGNELLAR 285
Query: 372 SLQ 364
+Q
Sbjct: 286 GVQ 288
>ref|NP_196515.1| surface protein PspC-related; protein id: At5g09530.1, supported by
cDNA: gi_15451135 [Arabidopsis thaliana]
gi|11358609|pir||T49945 periaxin-like protein -
Arabidopsis thaliana gi|7671436|emb|CAB89377.1|
periaxin-like protein [Arabidopsis thaliana]
Length = 370
Score = 32.0 bits (71), Expect = 5.2
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = -1
Query: 519 KFIETGKIEEMPELLLEEQPEQLKLPGKPR-NLLTYPGTPNLEGLKDLAKSLQNPKLEK 346
KF E K E+P+L+ E+PE K+P P+ L P P LE K +Q P+L K
Sbjct: 168 KFPENSK-PEVPKLMETEKPEAPKVPEIPKPELPKLPEVPKLEAPK--VPEIQKPELPK 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,938,117
Number of Sequences: 1393205
Number of extensions: 9061065
Number of successful extensions: 20357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20350
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
