Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001502A_C01 KMC001502A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172536.1| unknown protein; protein id: At1g10660.1 [Arabi... 206 3e-52
ref|NP_566825.1| expressed protein; protein id: At3g27770.1, sup... 171 1e-41
ref|NP_566096.1| unknown protein; protein id: At2g47115.1 [Arabi... 168 8e-41
dbj|BAC15474.1| contains EST AU092143(C10985)~similar to Arabido... 143 2e-33
ref|NP_683487.1| hypothetical protein; protein id: At1g70505.1 [... 96 3e-23
>ref|NP_172536.1| unknown protein; protein id: At1g10660.1 [Arabidopsis thaliana]
gi|24030401|gb|AAN41360.1| unknown protein [Arabidopsis
thaliana]
Length = 320
Score = 206 bits (524), Expect = 3e-52
Identities = 89/129 (68%), Positives = 109/129 (83%)
Frame = -3
Query: 709 YIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNGM 530
YIFQI+FQTCAGAVVLTD+VFW ++YPF K ++L VCMHS+NAVFLLG+TSLN +
Sbjct: 184 YIFQILFQTCAGAVVLTDIVFWAIIYPFT--KGYKLSFLDVCMHSLNAVFLLGDTSLNSL 241
Query: 529 RFPMFRFAYFILWTGIFVIFQWIIHAFVSMWWPYPFLDLSSPYAPLWYFAVGALHIPCYA 350
RFP+FR AYF+LW+ IFV +QWIIHA ++WWPY FLDLSSPYAPLWY V +HIPC+A
Sbjct: 242 RFPLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYLGVAVMHIPCFA 301
Query: 349 IFALVVKVK 323
+FALV+K+K
Sbjct: 302 VFALVIKLK 310
>ref|NP_566825.1| expressed protein; protein id: At3g27770.1, supported by cDNA:
gi_16974601 [Arabidopsis thaliana]
gi|16974602|gb|AAL31204.1| AT3g27760/MGF10_16
[Arabidopsis thaliana] gi|26452800|dbj|BAC43480.1|
unknown protein [Arabidopsis thaliana]
Length = 315
Score = 171 bits (432), Expect = 1e-41
Identities = 72/134 (53%), Positives = 102/134 (75%)
Frame = -3
Query: 709 YIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNGM 530
++FQI++Q AGA VLTD ++W V++PFL+ +D+ + V +H+ N V LL +T LN +
Sbjct: 182 HLFQIIYQMGAGAAVLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVLLLIDTFLNRL 241
Query: 529 RFPMFRFAYFILWTGIFVIFQWIIHAFVSMWWPYPFLDLSSPYAPLWYFAVGALHIPCYA 350
+FP+FRF+YFILWTG FV+FQWI+H F+S+ WPYPFL+LS AP+WY V LH+P Y
Sbjct: 242 KFPLFRFSYFILWTGCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYLLVALLHLPSYG 301
Query: 349 IFALVVKVKYLWLS 308
+FAL+VK+KY +S
Sbjct: 302 LFALIVKIKYKLIS 315
>ref|NP_566096.1| unknown protein; protein id: At2g47115.1 [Arabidopsis thaliana]
gi|20197140|gb|AAM14934.1| predicted protein
[Arabidopsis thaliana]
Length = 289
Score = 168 bits (425), Expect = 8e-41
Identities = 74/138 (53%), Positives = 94/138 (67%)
Frame = -3
Query: 703 FQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNGMRF 524
F+ +T AGAVVLTD+VFWLV+ PFL+ F L +CMH+ NA FLL ET LN + F
Sbjct: 149 FRRRLETSAGAVVLTDIVFWLVIVPFLSTTRFGLNTLTICMHTANAGFLLLETLLNSLPF 208
Query: 523 PMFRFAYFILWTGIFVIFQWIIHAFVSMWWPYPFLDLSSPYAPLWYFAVGALHIPCYAIF 344
P FR YF+LW+ ++VIFQWIIHA WWPYPFL+L P+AP+WY + +HIPCY +
Sbjct: 209 PWFRMGYFVLWSCLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYLCMAIVHIPCYGAY 268
Query: 343 ALVVKVKYLWLSRLFPGS 290
A +VK K LFP +
Sbjct: 269 AAIVKAKNSCFPYLFPNA 286
>dbj|BAC15474.1| contains EST AU092143(C10985)~similar to Arabidopsis thaliana
chromosome 1, At1g10660~unknown protein [Oryza sativa
(japonica cultivar-group)] gi|22831285|dbj|BAC16140.1|
contains EST AU092143(C10985)~similar to Arabidopsis
thaliana chromosome 1, At1g10660~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 390
Score = 143 bits (361), Expect = 2e-33
Identities = 69/139 (49%), Positives = 92/139 (65%)
Frame = -3
Query: 712 GYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNG 533
G QI++QT AGA +LTD+ FW +L PF F L L MHS+NAV LL +T LN
Sbjct: 247 GRCMQIIYQTSAGATMLTDITFWGLLVPFFYRDKFGLSLITDGMHSLNAVLLLIDTFLNN 306
Query: 532 MRFPMFRFAYFILWTGIFVIFQWIIHAFVSMWWPYPFLDLSSPYAPLWYFAVGALHIPCY 353
M FP +R A+F+ W+ +V FQW++HA ++ WPYPFLDLSS APL Y A+ +HIPC+
Sbjct: 307 MPFPWYRLAFFVFWSCSYVTFQWVLHACGAISWPYPFLDLSSSGAPL-YLAMAIVHIPCF 365
Query: 352 AIFALVVKVKYLWLSRLFP 296
++ +VK K + RLFP
Sbjct: 366 FLYWSIVKAKQTYFPRLFP 384
>ref|NP_683487.1| hypothetical protein; protein id: At1g70505.1 [Arabidopsis
thaliana]
Length = 338
Score = 95.9 bits (237), Expect(2) = 3e-23
Identities = 44/63 (69%), Positives = 50/63 (78%)
Frame = -3
Query: 712 GYIFQIMFQTCAGAVVLTDLVFWLVLYPFLAPKDFRLGLFAVCMHSVNAVFLLGETSLNG 533
GYI QI+FQTCAGAV+LTD VFW ++YPFL KDF L F V MHSVNA+FLLGET LN
Sbjct: 211 GYIHQILFQTCAGAVLLTDGVFWFIIYPFLTAKDFNLDFFIVIMHSVNAIFLLGETFLNS 270
Query: 532 MRF 524
+ F
Sbjct: 271 LGF 273
Score = 34.7 bits (78), Expect(2) = 3e-23
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 494 VDRHICDFSMDHTCLCFNVVALSFP*LVIPICTLVV 387
+DRHI SMD +CLC +VAL VI +C+ +V
Sbjct: 278 MDRHIRAISMDCSCLCLLLVALPILGFVIILCSFMV 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,511,015
Number of Sequences: 1393205
Number of extensions: 16292635
Number of successful extensions: 41956
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 40075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41885
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
