Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001499A_C01 KMC001499A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52175.1|AC012329_2 hypothetical protein; 64929-63336 [Arab... 32 0.19
ref|NP_190517.1| putative protein; protein id: At3g49480.1 [Arab... 32 0.20
ref|NP_200468.1| putative protein; protein id: At5g56570.1 [Arab... 36 0.24
ref|NP_190835.1| F-box protein; protein id: At3g52670.1 [Arabido... 36 0.31
pir||A86323 protein F14D16.3 [imported] - Arabidopsis thaliana g... 35 0.53
>gb|AAG52175.1|AC012329_2 hypothetical protein; 64929-63336 [Arabidopsis thaliana]
Length = 449
Score = 32.0 bits (71), Expect(2) = 0.19
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 456 LDMLNPCPKLQVVVFNFTNDDDDEDGDVWPYPPYVPECFSSHL 328
L +L+ C KL+V + + + D +W P +P C SSHL
Sbjct: 336 LVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHL 378
Score = 23.5 bits (49), Expect(2) = 0.19
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 272 RYVMENSTSLRTMSMTIDSYCKNPKKEVQMIKELAS 165
RY++ENS L+T ++ +S +K Q ++EL S
Sbjct: 397 RYILENSKYLKTAGISPNSTFSGEEK--QKMEELES 430
>ref|NP_190517.1| putative protein; protein id: At3g49480.1 [Arabidopsis thaliana]
gi|11358455|pir||T46226 hypothetical protein T9C5.80 -
Arabidopsis thaliana gi|6561949|emb|CAB62453.1| putative
protein [Arabidopsis thaliana]
Length = 309
Score = 32.0 bits (71), Expect(2) = 0.20
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 456 LDMLNPCPKLQVVVFNFTNDDDDEDGDVWPYPPYVPECFSSHL 328
L +L+ C KL+V + + + D +W P +P C SSHL
Sbjct: 196 LVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHL 238
Score = 23.5 bits (49), Expect(2) = 0.20
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 272 RYVMENSTSLRTMSMTIDSYCKNPKKEVQMIKELAS 165
RY++ENS L+T ++ +S +K Q ++EL S
Sbjct: 257 RYILENSKYLKTAGISPNSTFSGEEK--QKMEELES 290
>ref|NP_200468.1| putative protein; protein id: At5g56570.1 [Arabidopsis thaliana]
gi|10176760|dbj|BAB09874.1|
gene_id:MIK19.1~pir||T06019~similar to unknown protein
[Arabidopsis thaliana]
Length = 439
Score = 36.2 bits (82), Expect = 0.24
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 450 MLNPCPKLQVVVFNFTNDDDDEDGDVWPYPPYVPECFSSHLTKCFLKDFKGLD 292
MLN P L+ + D VW P VPEC S+ L +D++G +
Sbjct: 336 MLNDAPNLRSLTLKLRQKSDVNPKKVWEKPTVVPECLSTRLEILKWRDYEGTE 388
>ref|NP_190835.1| F-box protein; protein id: At3g52670.1 [Arabidopsis thaliana]
gi|11357766|pir||T49020 hypothetical protein F3C22.70 -
Arabidopsis thaliana (fragment)
gi|7669941|emb|CAB89228.1| putative protein [Arabidopsis
thaliana]
Length = 384
Score = 35.8 bits (81), Expect = 0.31
Identities = 20/44 (45%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = -2
Query: 450 MLNPCPKLQVV-VFNFTND--DDDEDGDVWPYPPYVPECFSSHL 328
ML+ PKLQV+ + + T D D+ + W P YVPEC SHL
Sbjct: 267 MLDSSPKLQVLKLIDHTQDVSKDNVVSEKWNEPKYVPECLLSHL 310
>pir||A86323 protein F14D16.3 [imported] - Arabidopsis thaliana
gi|8778297|gb|AAF79306.1|AC068602_29 F14D16.3
[Arabidopsis thaliana]
Length = 1260
Score = 35.0 bits (79), Expect = 0.53
Identities = 23/80 (28%), Positives = 40/80 (49%), Gaps = 4/80 (5%)
Frame = -3
Query: 515 FPI*LVWSSSWEDLSHLVWHLICS----ILALSFRWLSLILLMMMMMKMEMFGHTHHMFP 348
FP+ ++ + S+E+ + LVW ICS +L F W++ L+ K E+ + P
Sbjct: 175 FPL-MIENFSFEEQASLVWQFICSVPVMVLEEIFPWMT--SLLSPKEKSEVETCFKEVVP 231
Query: 347 NVFLHILRSAFLKILKDWIV 288
N L FLK++ W++
Sbjct: 232 NELSLQLTKLFLKVINSWLI 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,435,293
Number of Sequences: 1393205
Number of extensions: 9621106
Number of successful extensions: 34152
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32201
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
