Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001492A_C01 KMC001492A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC22376.1| putative ABC transporter family protein [Oryza s... 94 1e-18
gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica ... 80 3e-14
ref|NP_188746.2| ABC transporter family protein; protein id: At3... 78 1e-13
gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|2319839... 78 1e-13
pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana ... 75 5e-13
>dbj|BAC22376.1| putative ABC transporter family protein [Oryza sativa (japonica
cultivar-group)] gi|24414247|dbj|BAC22487.1| putative
ABC transporter family protein [Oryza sativa (japonica
cultivar-group)]
Length = 724
Score = 94.4 bits (233), Expect = 1e-18
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = -1
Query: 592 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVKVNYSKWVDV 413
+YP +IS++KYA QGL+KNE GL F + G +TISGE IL++ QV+++YSKWVD+
Sbjct: 629 KYPTYFISYHKYATQGLYKNELLGLVF-EDIGGGGLTISGEYILKNYLQVELSYSKWVDL 687
Query: 412 AILVGMAVTYRILFLAIIKSFEKVKPIVTAINC 314
AILV M + YR+LFL IIK E VKP + C
Sbjct: 688 AILVAMIIIYRLLFLVIIKISEIVKPRMLHFLC 720
>gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 723
Score = 79.7 bits (195), Expect = 3e-14
Identities = 41/88 (46%), Positives = 58/88 (65%)
Frame = -1
Query: 592 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVKVNYSKWVDV 413
RYP+ YISF+ +A QG ++N+ GL F + E P I GE IL +++Q+ V+ SKW+D+
Sbjct: 594 RYPMSYISFHYWALQGQYQNDLKGLVFDNQDDELP-KIPGEYILENVFQIDVSRSKWLDL 652
Query: 412 AILVGMAVTYRILFLAIIKSFEKVKPIV 329
A+L M YR+LF A+IK E V P V
Sbjct: 653 AVLFSMIFIYRLLFFAMIKVSEDVTPWV 680
>ref|NP_188746.2| ABC transporter family protein; protein id: At3g21090.1, supported
by cDNA: gi_20260309 [Arabidopsis thaliana]
Length = 691
Score = 77.8 bits (190), Expect = 1e-13
Identities = 38/91 (41%), Positives = 58/91 (62%)
Frame = -1
Query: 592 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVKVNYSKWVDV 413
RYP+ YIS+ +A QG +KN+F GL F G ++GE+++ ++ VKV YSKW D+
Sbjct: 551 RYPVSYISYGSWAIQGGYKNDFLGLEFEP-LFPGEPKMTGEEVIEKVFGVKVTYSKWWDL 609
Query: 412 AILVGMAVTYRILFLAIIKSFEKVKPIVTAI 320
A +V + V YR+LF ++K E+ P + AI
Sbjct: 610 AAVVAILVCYRLLFFVVLKLRERAGPALKAI 640
>gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|23198394|gb|AAN15724.1|
unknown protein [Arabidopsis thaliana]
Length = 691
Score = 77.8 bits (190), Expect = 1e-13
Identities = 38/91 (41%), Positives = 58/91 (62%)
Frame = -1
Query: 592 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVKVNYSKWVDV 413
RYP+ YIS+ +A QG +KN+F GL F G ++GE+++ ++ VKV YSKW D+
Sbjct: 551 RYPVSYISYGSWAIQGGYKNDFLGLEFEP-LFPGEPKMTGEEVIEKVFGVKVTYSKWWDL 609
Query: 412 AILVGMAVTYRILFLAIIKSFEKVKPIVTAI 320
A +V + V YR+LF ++K E+ P + AI
Sbjct: 610 AAVVAILVCYRLLFFVVLKLRERAGPALKAI 640
>pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana
gi|9665062|gb|AAF97264.1|AC034106_7 Contains similarity
to ATP dependent transmembrane transporter protein (wh3)
from Bombyx mori gb|AF229609 and contains an ABC
transporter PF|00005 domain. ESTs gb|Z18062,
gb|AI999375, gb|N96732, gb|F14058, gb|AV528782,
gb|AV559526, gb|AV556190, gb|AV562800, gb|AV559560,
gb|AV523165, gb|AV565094, gb|AV566285 come from this
gene. [Arabidopsis thaliana]
Length = 659
Score = 75.5 bits (184), Expect = 5e-13
Identities = 35/88 (39%), Positives = 59/88 (66%)
Frame = -1
Query: 592 RYPLQYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVKVNYSKWVDV 413
RYP+ YISF+ +A QG ++N+ GLTF S I GE +L +++Q+ ++ SKW+++
Sbjct: 529 RYPMSYISFHFWALQGQYQNDLRGLTFDSQG--SAFKIPGEYVLENVFQIDLHRSKWINL 586
Query: 412 AILVGMAVTYRILFLAIIKSFEKVKPIV 329
++++ M + YRI+F +IK+ E V P V
Sbjct: 587 SVILSMIIIYRIIFFIMIKTNEDVTPWV 614
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,882,782
Number of Sequences: 1393205
Number of extensions: 9358604
Number of successful extensions: 19219
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19201
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
