Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001491A_C01 KMC001491A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] 121 7e-27
ref|NP_199096.1| splicing factor U2AF small subunit, putative; p... 88 8e-17
gb|AAL06332.1|AF409140_1 U2 auxiliary factor small subunit [Arab... 86 4e-16
ref|NP_174086.1| splicing factor U2AF small subunit, putative; p... 85 9e-16
gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arab... 82 8e-15
>gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus]
Length = 310
Score = 121 bits (304), Expect = 7e-27
Identities = 79/135 (58%), Positives = 90/135 (66%), Gaps = 3/135 (2%)
Frame = -2
Query: 641 SRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQFGGRGGSGRRDFDRSHGRH 462
SR+LRR+LFGR +R SRSRSRSP +R + +RP GGRG GRRD DR+ H
Sbjct: 177 SRELRRQLFGRYRR------RHSRSRSRSPQAHRGHGDRPH-GGRG-YGRRDDDRNQRYH 228
Query: 461 --GRKPRSRSPPRFRGKRSRSPAGR-DRSPVRESSAERRAKIEQWNREKEQDDTGPKNNT 291
GR+PRSRSP RG RSRSP GR DRSPVRE+S ERRAKI QWNREKEQ DTG +
Sbjct: 229 DKGRRPRSRSPGH-RG-RSRSPPGRRDRSPVRENSEERRAKIAQWNREKEQADTGNNDVN 286
Query: 290 SDDYDELAQNGSDSG 246
D D A D+G
Sbjct: 287 HDVTDNHANGFQDNG 301
>ref|NP_199096.1| splicing factor U2AF small subunit, putative; protein id:
At5g42820.1, supported by cDNA: gi_15723292 [Arabidopsis
thaliana] gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary
factor small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
Length = 283
Score = 88.2 bits (217), Expect = 8e-17
Identities = 58/115 (50%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Frame = -2
Query: 641 SRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQFGG-----RGGSGRRDFDR 477
SR+LRR+LFGR +R + RRGSRSRSRS SP R R + + G R G+G+R DR
Sbjct: 177 SRELRRKLFGRYRR-SYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDR 235
Query: 476 S--HGRHGRKPRSRSPPRFRGKRSRSPAGRDRSPVRESSAERRAKIEQWNREKEQ 318
S H R G R P KRSRSP VRE S ERRA+IEQWNRE+++
Sbjct: 236 SERHDRDGGGRRRHGSP----KRSRSPRN-----VREGSEERRARIEQWNRERDE 281
>gb|AAL06332.1|AF409140_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 283
Score = 85.9 bits (211), Expect = 4e-16
Identities = 57/115 (49%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Frame = -2
Query: 641 SRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQFGG-----RGGSGRRDFDR 477
SR+LRR+LFGR +R + RRGSRSRSRS SP R R + + G R G+G+R DR
Sbjct: 177 SRELRRKLFGRYRR-SYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDR 235
Query: 476 S--HGRHGRKPRSRSPPRFRGKRSRSPAGRDRSPVRESSAERRAKIEQWNREKEQ 318
S + R G R P KRSRSP VRE S ERRA+IEQWNRE+++
Sbjct: 236 SERYDRDGGGRRRHGSP----KRSRSPRN-----VREGSEERRARIEQWNRERDE 281
>ref|NP_174086.1| splicing factor U2AF small subunit, putative; protein id:
At1g27650.1, supported by cDNA: 7697., supported by
cDNA: gi_12744990, supported by cDNA: gi_15723290,
supported by cDNA: gi_17528935, supported by cDNA:
gi_19699274, supported by cDNA: gi_20465942 [Arabidopsis
thaliana] gi|5668775|gb|AAD46002.1|AC005916_14 Strong
similarity to gb|Y18349 U2 snRNP auxiliary factor, small
subunit from Oryza sativa. ESTs gb|AA586295 and
gb|AA597332 come from this gene. [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
[Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
Length = 296
Score = 84.7 bits (208), Expect = 9e-16
Identities = 61/121 (50%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Frame = -2
Query: 641 SRDLRRRLFGRNKRWNDRRGSRSRSRSRS-PPRNRNYEERPQFGGRGGSGRRDFDRSHGR 465
SR+LRR+LFGR +R + RRGSRSRSRSRS PRN+ +R R S RD DR R
Sbjct: 177 SRELRRKLFGRYRR-SYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFS-HRDRDREFYR 234
Query: 464 HGRKPRSRSPPR------FRGKRSRSPAGRDRSPV--RESSAERRAKIEQWNREKEQDDT 309
HG RS RG+R SP R SP RE S ERRA+IEQWNRE+E+ +
Sbjct: 235 HGSGKRSSERSERQERDGSRGRRQASPK-RGGSPGGGREGSEERRARIEQWNREREEKEE 293
Query: 308 G 306
G
Sbjct: 294 G 294
>gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 296
Score = 81.6 bits (200), Expect = 8e-15
Identities = 60/121 (49%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Frame = -2
Query: 641 SRDLRRRLFGRNKRWNDRRGSRSRSRSRS-PPRNRNYEERPQFGGRGGSGRRDFDRSHGR 465
SR+LRR+L GR +R + RRGSRSRSRSRS PRN+ +R R S RD DR R
Sbjct: 177 SRELRRKLSGRYRR-SYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFS-HRDRDREFYR 234
Query: 464 HGRKPRSRSPPR------FRGKRSRSPAGRDRSPV--RESSAERRAKIEQWNREKEQDDT 309
HG RS RG+R SP R SP RE S ERRA+IEQWNRE+E+ +
Sbjct: 235 HGSGKRSSERSERQERDGSRGRRQASPK-RGGSPGGGREGSEERRARIEQWNREREEKEE 293
Query: 308 G 306
G
Sbjct: 294 G 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,959,410
Number of Sequences: 1393205
Number of extensions: 13222283
Number of successful extensions: 95669
Number of sequences better than 10.0: 1922
Number of HSP's better than 10.0 without gapping: 66456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86577
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
