Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001489A_C15 KMC001489A_c15
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88226.1| thiamin biosynthetic enzyme [Glycine max] 148 1e-38
dbj|BAA88225.1| thiamin biosynthetic enzyme [Glycine max] 149 1e-38
dbj|BAA88227.1| thiamin biosynthetic enzyme [Glycine max] 149 1e-38
dbj|BAA88228.1| thiamin biosynthetic enzyme [Glycine max] 147 2e-38
sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplast p... 144 4e-37
>dbj|BAA88226.1| thiamin biosynthetic enzyme [Glycine max]
Length = 349
Score = 148 bits (373), Expect(2) = 1e-38
Identities = 78/93 (83%), Positives = 83/93 (88%)
Frame = -2
Query: 690 KRLKSIRLIDRVPGMKALDLNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 511
KRLKSI LID VPGMKALD+N AEDAIV+LTREVVPGMIVTGMEVAEIDGAPRMGPTFGA
Sbjct: 245 KRLKSIGLIDSVPGMKALDMNKAEDAIVKLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 304
Query: 510 MMISGQKAAHLALRSLGLPHPVDKNNAAGNDPP 412
MMISGQKAAHLALRSLGLP+ +D + GN P
Sbjct: 305 MMISGQKAAHLALRSLGLPNALD---SVGNVHP 334
Score = 34.3 bits (77), Expect(2) = 1e-38
Identities = 18/21 (85%), Positives = 19/21 (89%)
Frame = -3
Query: 425 GTIHPELVLAAATESAEIADA 363
G +HPELVLAAA ESAEIADA
Sbjct: 330 GNVHPELVLAAA-ESAEIADA 349
>dbj|BAA88225.1| thiamin biosynthetic enzyme [Glycine max]
Length = 345
Score = 149 bits (376), Expect(2) = 1e-38
Identities = 79/93 (84%), Positives = 83/93 (88%)
Frame = -2
Query: 690 KRLKSIRLIDRVPGMKALDLNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 511
KRLKSI LID VPGMKALD+N AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA
Sbjct: 241 KRLKSIGLIDSVPGMKALDMNKAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 300
Query: 510 MMISGQKAAHLALRSLGLPHPVDKNNAAGNDPP 412
MMISGQKAAHLALRSLGLP+ +D + GN P
Sbjct: 301 MMISGQKAAHLALRSLGLPNALD---SVGNVHP 330
Score = 32.7 bits (73), Expect(2) = 1e-38
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -3
Query: 425 GTIHPELVLAAATESAEIADA 363
G +HPELVLAAA ESAEIA+A
Sbjct: 326 GNVHPELVLAAA-ESAEIAEA 345
>dbj|BAA88227.1| thiamin biosynthetic enzyme [Glycine max]
Length = 345
Score = 149 bits (376), Expect(2) = 1e-38
Identities = 79/93 (84%), Positives = 83/93 (88%)
Frame = -2
Query: 690 KRLKSIRLIDRVPGMKALDLNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 511
KRLKSI LID VPGMKALD+N AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA
Sbjct: 241 KRLKSIGLIDSVPGMKALDMNKAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 300
Query: 510 MMISGQKAAHLALRSLGLPHPVDKNNAAGNDPP 412
MMISGQKAAHLALRSLGLP+ +D + GN P
Sbjct: 301 MMISGQKAAHLALRSLGLPNALD---SVGNVHP 330
Score = 32.7 bits (73), Expect(2) = 1e-38
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -3
Query: 425 GTIHPELVLAAATESAEIADA 363
G +HPELVLAAA ESAEIA+A
Sbjct: 326 GNVHPELVLAAA-ESAEIAEA 345
>dbj|BAA88228.1| thiamin biosynthetic enzyme [Glycine max]
Length = 349
Score = 147 bits (371), Expect(2) = 2e-38
Identities = 78/93 (83%), Positives = 82/93 (87%)
Frame = -2
Query: 690 KRLKSIRLIDRVPGMKALDLNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 511
KRLKSI LID VPGMKALD+N AEDAIV LTREVVPGMIVTGMEVAEIDGAPRMGPTFGA
Sbjct: 245 KRLKSIGLIDSVPGMKALDMNKAEDAIVELTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 304
Query: 510 MMISGQKAAHLALRSLGLPHPVDKNNAAGNDPP 412
MMISGQKAAHLALRSLGLP+ +D + GN P
Sbjct: 305 MMISGQKAAHLALRSLGLPNALD---SVGNVHP 334
Score = 34.3 bits (77), Expect(2) = 2e-38
Identities = 18/21 (85%), Positives = 19/21 (89%)
Frame = -3
Query: 425 GTIHPELVLAAATESAEIADA 363
G +HPELVLAAA ESAEIADA
Sbjct: 330 GNVHPELVLAAA-ESAEIADA 349
>sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplast precursor (AG6)
gi|1289204|emb|CAA66064.1| thaizole biosynthetic enzmye
[Alnus glutinosa]
Length = 352
Score = 144 bits (364), Expect(2) = 4e-37
Identities = 72/92 (78%), Positives = 81/92 (87%)
Frame = -2
Query: 690 KRLKSIRLIDRVPGMKALDLNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 511
K L+SI +ID VPGMKALD+N AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGA
Sbjct: 246 KSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGA 305
Query: 510 MMISGQKAAHLALRSLGLPHPVDKNNAAGNDP 415
MMISGQKAAHLAL++LGLP+ +D + G P
Sbjct: 306 MMISGQKAAHLALKALGLPNALDGSYVGGIHP 337
Score = 32.3 bits (72), Expect(2) = 4e-37
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -3
Query: 425 GTIHPELVLAAATESAEIADA 363
G IHPEL+LAAA +SAEIADA
Sbjct: 333 GGIHPELILAAA-DSAEIADA 352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,714,317
Number of Sequences: 1393205
Number of extensions: 13003386
Number of successful extensions: 35386
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 33357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35299
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
