Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001487A_C02 KMC001487A_c02
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S25164 polyubiquitin - garden snapdragon (fragment) gi|1607... 174 7e-43
ref|NP_567247.1| polyubiquitin (UBQ14); protein id: At4g02890.1,... 174 7e-43
pir||UQPM polyubiquitin 5 - garden pea gi|20589|emb|CAA34886.1| ... 174 7e-43
gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 174 7e-43
gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thaliana] 174 7e-43
>pir||S25164 polyubiquitin - garden snapdragon (fragment)
gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus]
Length = 296
Score = 174 bits (440), Expect = 7e-43
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 209 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 268
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGGF 238
LEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 269 LEDGRTLADYNIQKESTLHLVLRLRGGF 296
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 57 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 116
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 117 LEDGRTLADYNIQKESTLHLVLRLRGG 143
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 133 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 192
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 193 LEDGRTLADYNIQKESTLHLVLRLRGG 219
Score = 134 bits (336), Expect = 8e-31
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = -2
Query: 441 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 262
GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL
Sbjct: 1 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 60
Query: 261 VLRLRGG 241
VLRLRGG
Sbjct: 61 VLRLRGG 67
>ref|NP_567247.1| polyubiquitin (UBQ14); protein id: At4g02890.1, supported by cDNA:
38261. [Arabidopsis thaliana] gi|1076708|pir||S49332
polyubiquitin 4 - common sunflower
gi|25294250|pir||G85036 polyubiquitin [imported] -
Arabidopsis thaliana gi|303901|dbj|BAA03764.1| ubiquitin
[Glycine max] gi|456714|dbj|BAA05670.1| ubiquitin
[Glycine max] gi|556688|emb|CAA84440.1| seed
tetraubiquitin [Helianthus annuus]
gi|994785|dbj|BAA05085.1| Ubiquitin [Glycine max]
gi|4263514|gb|AAD15340.1| putative polyubiquitin
[Arabidopsis thaliana] gi|7269774|emb|CAB77774.1|
polyubiquitin [Arabidopsis thaliana]
gi|21593346|gb|AAM65295.1| polyubiquitin (UBQ14)
[Arabidopsis thaliana] gi|1096513|prf||2111434A
tetraubiquitin
Length = 305
Score = 174 bits (440), Expect = 7e-43
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGGF 238
LEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 278 LEDGRTLADYNIQKESTLHLVLRLRGGF 305
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 126 LEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 202 LEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 150 bits (379), Expect = 8e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 468 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 289
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 288 IQKESTLHLVLRLRGG 241
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>pir||UQPM polyubiquitin 5 - garden pea gi|20589|emb|CAA34886.1| polyubiquitin
(AA 1-381) [Pisum sativum] gi|4115339|gb|AAD03344.1|
ubiquitin [Pisum sativum] gi|15450661|gb|AAK96602.1|
AT4g05320/C17L7_240 [Arabidopsis thaliana]
gi|226707|prf||1603402A poly-ubiquitin
Length = 381
Score = 174 bits (440), Expect = 7e-43
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 353
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGGF 238
LEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 354 LEDGRTLADYNIQKESTLHLVLRLRGGF 381
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 278 LEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 126 LEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 202 LEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 150 bits (379), Expect = 8e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 468 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 289
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 288 IQKESTLHLVLRLRGG 241
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gb|AAB68045.1| polyubiquitin [Fragaria x ananassa]
Length = 381
Score = 174 bits (440), Expect = 7e-43
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 353
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGGF 238
LEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 354 LEDGRTLADYNIQKESTLHLVLRLRGGF 381
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 278 LEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 202 LEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 169 bits (428), Expect = 2e-41
Identities = 86/87 (98%), Positives = 86/87 (98%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI DKEGIPPDQQRLIFAGKQ
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIXDKEGIPPDQQRLIFAGKQ 125
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 126 LEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 150 bits (379), Expect = 8e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 468 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 289
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 288 IQKESTLHLVLRLRGG 241
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thaliana]
Length = 381
Score = 174 bits (440), Expect = 7e-43
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 353
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGGF 238
LEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 354 LEDGRTLADYNIQKESTLHLVLRLRGGF 381
Score = 171 bits (434), Expect = 3e-42
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 277
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 278 LEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 169 bits (428), Expect = 2e-41
Identities = 86/87 (98%), Positives = 86/87 (98%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVL LRGG
Sbjct: 126 LEDGRTLADYNIQKESTLHLVLSLRGG 152
Score = 169 bits (428), Expect = 2e-41
Identities = 86/87 (98%), Positives = 86/87 (98%)
Frame = -2
Query: 501 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 322
TLHLVL LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ
Sbjct: 142 TLHLVLSLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201
Query: 321 LEDGRTLADYNIQKESTLHLVLRLRGG 241
LEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 202 LEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 150 bits (379), Expect = 8e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 468 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 289
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 288 IQKESTLHLVLRLRGG 241
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,053,787
Number of Sequences: 1393205
Number of extensions: 9393030
Number of successful extensions: 29731
Number of sequences better than 10.0: 1051
Number of HSP's better than 10.0 without gapping: 27442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29441
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
